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Aliases for PCGEM1 Gene

Subcategory (RNA class) for PCGEM1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for PCGEM1 Gene

  • PCGEM1, Prostate-Specific Transcript 2 3
  • PCGEM1, Prostate-Specific Transcript (Non-Protein Coding) 2 3 5
  • Prostate-Specific Transcript 1 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 71 2 3
  • Prostate Cancer Associated Transcript 9 2 3
  • Non-Protein Coding RNA 71 2
  • NCRNA00071 3
  • LINC00071 3
  • PCAT9 3

External Ids for PCGEM1 Gene

Previous GeneCards Identifiers for PCGEM1 Gene

  • GC02U990271
  • GC02P193322
  • GC02P193614
  • GC02P185474

Summaries for PCGEM1 Gene

Entrez Gene Summary for PCGEM1 Gene

  • This gene produces a long non-coding RNA that is overexpressed in prostate cancer and may act a marker for tumor progression. This RNA may act a negative regulator of apoptosis, and may promote activity of androgen receptor and Myc. [provided by RefSeq, Dec 2017]

GeneCards Summary for PCGEM1 Gene

PCGEM1 (PCGEM1, Prostate-Specific Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with PCGEM1 include Osteoarthritis and Prostate Disease.

Gene Wiki entry for PCGEM1 Gene

Additional gene information for PCGEM1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCGEM1 Gene

Genomics for PCGEM1 Gene

GeneHancer (GH) Regulatory Elements for PCGEM1 Gene

Top Transcription factor binding sites by QIAGEN in the PCGEM1 gene promoter:
  • LHX3b
  • Lhx3a
  • STAT1
  • POU3F2 (N-Oct-5b)
  • POU3F2 (N-Oct-5a)
  • POU3F2
  • CUTL1
  • HNF-1A
  • HNF-1
  • Nkx2-5

Genomic Locations for PCGEM1 Gene

Genomic Locations for PCGEM1 Gene
27,055 bases
Plus strand
27,055 bases
Plus strand

Genomic View for PCGEM1 Gene

Genes around PCGEM1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCGEM1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCGEM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCGEM1 Gene

Proteins for PCGEM1 Gene

Post-translational modifications for PCGEM1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCGEM1 Gene

Domains & Families for PCGEM1 Gene

Gene Families for PCGEM1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PCGEM1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PCGEM1 Gene

Function for PCGEM1 Gene

Phenotypes From GWAS Catalog for PCGEM1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCGEM1 Gene

Localization for PCGEM1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCGEM1 Gene

Pathways & Interactions for PCGEM1 Gene

SuperPathways for PCGEM1 Gene

No Data Available

Interacting Proteins for PCGEM1 Gene

Gene Ontology (GO) - Biological Process for PCGEM1 Gene


No data available for Pathways by source and SIGNOR curated interactions for PCGEM1 Gene

Drugs & Compounds for PCGEM1 Gene

No Compound Related Data Available

Transcripts for PCGEM1 Gene

mRNA/cDNA for PCGEM1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Unigene Clusters for PCGEM1 Gene

PCGEM1, prostate-specific transcript (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PCGEM1 Gene

No ASD Table

Relevant External Links for PCGEM1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for PCGEM1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PCGEM1 Gene

mRNA differential expression in normal tissues according to GTEx for PCGEM1 Gene

This gene is overexpressed in Prostate (x50.3).

NURSA nuclear receptor signaling pathways regulating expression of PCGEM1 Gene:


SOURCE GeneReport for Unigene cluster for PCGEM1 Gene:

genes like me logo Genes that share expression patterns with PCGEM1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCGEM1 Gene

Orthologs for PCGEM1 Gene

Evolution for PCGEM1 Gene

Gene Tree for PCGEM1 (if available)
Gene Tree for PCGEM1 (if available)

No data available for Orthologs for PCGEM1 Gene

Paralogs for PCGEM1 Gene

No data available for Paralogs for PCGEM1 Gene

Variants for PCGEM1 Gene

Sequence variations from dbSNP and Humsavar for PCGEM1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000046544 -- 192,749,015(+) C/T upstream_transcript_variant
rs1000098364 -- 192,748,713(+) A/C upstream_transcript_variant
rs1000102251 -- 192,758,643(+) T/G intron_variant
rs1000211084 -- 192,758,223(+) C/T intron_variant
rs1000356238 -- 192,755,236(+) G/C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PCGEM1 Gene

Variant ID Type Subtype PubMed ID
nsv1002677 CNV loss 25217958
nsv527665 CNV loss 19592680

Additional Variant Information for PCGEM1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PCGEM1 Gene

Disorders for PCGEM1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for PCGEM1 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
  • kashin-beck disease
prostate disease
  • prostate diseases
prostate cancer
  • prostate cancer, susceptibility to
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for PCGEM1

Genetic Association Database
Human Genome Epidemiology Navigator
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with PCGEM1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PCGEM1 Gene

Publications for PCGEM1 Gene

  1. Regulation of apoptosis by a prostate-specific and prostate cancer-associated noncoding gene, PCGEM1. (PMID: 16569192) Fu X … Srivastava S (DNA and cell biology 2006) 2 3 22 58
  2. PCGEM1, a prostate-specific gene, is overexpressed in prostate cancer. (PMID: 11050243) Srikantan V … Srivastava S (Proceedings of the National Academy of Sciences of the United States of America 2000) 2 3 22 58
  3. Association between lncrna PCGEM1 polymorphisms and prostate cancer risk. (PMID: 23459097) Xue Y … Wu D (Prostate cancer and prostatic diseases 2013) 2 3 58
  4. Risk of breast and prostate cancer is not associated with increased homozygosity in outbred populations. (PMID: 20407466) Enciso-Mora V … Houlston RS (European journal of human genetics : EJHG 2010) 3 44 58
  5. Elevated expression of PCGEM1, a prostate-specific gene with cell growth-promoting function, is associated with high-risk prostate cancer patients. (PMID: 14724589) Petrovics G … Srivastava S (Oncogene 2004) 3 22 58

Products for PCGEM1 Gene

Sources for PCGEM1 Gene

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