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Aliases for PCDHB19P Gene

Aliases for PCDHB19P Gene

  • Protocadherin Beta 19 Pseudogene 2 3 5
  • PCDH-PSI5 3
  • PCDHB19 3

External Ids for PCDHB19P Gene

Previous GeneCards Identifiers for PCDHB19P Gene

  • GC05P140435
  • GC05P141202
  • GC05P140603
  • GC05P140647
  • GC05P140606
  • GC05P140612
  • GC05P140615
  • GC05P140619
  • GC05P140625
  • GC05P140629
  • GC05P140633
  • GC05P140636
  • GC05P140639
  • GC05P140643
  • GC05P140646
  • GC05P140650
  • GC05P141357
  • GC05P141506
  • GC05P141612
  • GC05P141715
  • GC05P141814
  • GC05P141913
  • GC05P142021
  • GC05P142126

Summaries for PCDHB19P Gene

GeneCards Summary for PCDHB19P Gene

PCDHB19P (Protocadherin Beta 19 Pseudogene) is a Pseudogene.

Additional gene information for PCDHB19P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCDHB19P Gene

Genomics for PCDHB19P Gene

GeneHancer (GH) Regulatory Elements for PCDHB19P Gene

Promoters and enhancers for PCDHB19P Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J140717 Promoter/Enhancer 1.6 Ensembl ENCODE 32 -520.8 -520787 2.7 MLX IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 SP3 PPARGC1A MEF2D GC05P142304 VTRNA1-2 ANKHD1 PURA HARS2 PCDHB18P PCDHB19P HDAC3 WDR55 PCDHGA6
GH05J141679 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 21.2 +441.9 441888 4.7 HDGF ARNT SIN3A ZNF2 YY1 CBX5 ZNF213 FOS SP3 REST ARAP3 PCDHB19P HARS2 DELE1 PCDHB18P PCDHGA7 PCDH1 PCDH12 RNF14 HDAC3
GH05J141968 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 20.2 +729.6 729644 3 CLOCK DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 NFYC GLIS1 RNF14 PCDH12 LOC102723915 HDAC3 PCDHB18P PCDHGA6 PCDHGA7 DELE1 PCDHGA5 ENSG00000271871
GH05J140710 Promoter/Enhancer 1.6 Ensembl ENCODE 22.4 -528.9 -528939 1.9 CLOCK FEZF1 IRF4 YY1 ZNF213 ZNF143 SP3 SSRP1 ZNF610 GLIS1 GC05P142295 LOC105378198 VTRNA1-1 HARS2 ANKHD1 WDR55 LOC102723915 HDAC3 PCDHB18P PURA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PCDHB19P on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the PCDHB19P gene promoter:

Genomic Locations for PCDHB19P Gene

Genomic Locations for PCDHB19P Gene
4,830 bases
Plus strand

Genomic View for PCDHB19P Gene

Genes around PCDHB19P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCDHB19P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCDHB19P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCDHB19P Gene

Proteins for PCDHB19P Gene

Post-translational modifications for PCDHB19P Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCDHB19P Gene

Domains & Families for PCDHB19P Gene

Gene Families for PCDHB19P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PCDHB19P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PCDHB19P Gene

Function for PCDHB19P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCDHB19P Gene

Localization for PCDHB19P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCDHB19P Gene

Pathways & Interactions for PCDHB19P Gene

SuperPathways for PCDHB19P Gene

No Data Available

Interacting Proteins for PCDHB19P Gene

Gene Ontology (GO) - Biological Process for PCDHB19P Gene


No data available for Pathways by source and SIGNOR curated interactions for PCDHB19P Gene

Drugs & Compounds for PCDHB19P Gene

No Compound Related Data Available

Transcripts for PCDHB19P Gene

mRNA/cDNA for PCDHB19P Gene

(2) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PCDHB19P Gene

Protocadherin beta 19 pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PCDHB19P Gene

No ASD Table

Relevant External Links for PCDHB19P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for PCDHB19P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PCDHB19P Gene

mRNA differential expression in normal tissues according to GTEx for PCDHB19P Gene

This gene is overexpressed in Testis (x23.8).

NURSA nuclear receptor signaling pathways regulating expression of PCDHB19P Gene:


SOURCE GeneReport for Unigene cluster for PCDHB19P Gene:

genes like me logo Genes that share expression patterns with PCDHB19P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCDHB19P Gene

Orthologs for PCDHB19P Gene

Evolution for PCDHB19P Gene

Gene Tree for PCDHB19P (if available)
Gene Tree for PCDHB19P (if available)

No data available for Orthologs for PCDHB19P Gene

Paralogs for PCDHB19P Gene

No data available for Paralogs for PCDHB19P Gene

Variants for PCDHB19P Gene

Sequence variations from dbSNP and Humsavar for PCDHB19P Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1001559801 -- 141,244,317(+) T/C non_coding_transcript_variant
rs1002336027 -- 141,243,652(+) T/C non_coding_transcript_variant
rs1002658227 -- 141,242,527(+) G/T non_coding_transcript_variant
rs1002732743 -- 141,243,935(+) C/T non_coding_transcript_variant
rs10036693 -- 141,238,398(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for PCDHB19P Gene

Variant ID Type Subtype PubMed ID
esv2759382 CNV gain 17122850
nsv1024594 CNV loss 25217958
nsv428127 CNV loss 18775914
nsv471634 CNV gain+loss 15918152
nsv599908 CNV loss 21841781
nsv964960 CNV duplication 23825009

Additional Variant Information for PCDHB19P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PCDHB19P Gene

Disorders for PCDHB19P Gene

Additional Disease Information for PCDHB19P

No disorders were found for PCDHB19P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PCDHB19P Gene

Publications for PCDHB19P Gene

  1. Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. (PMID: 11230163) Wu Q … Maniatis T (Genome research 2001) 2 3 58
  2. The human and murine protocadherin-beta one-exon gene families show high evolutionary conservation, despite the difference in gene number. (PMID: 11322959) Vanhalst K … van Roy F (FEBS letters 2001) 2 3 58
  3. Large exons encoding multiple ectodomains are a characteristic feature of protocadherin genes. (PMID: 10716726) Wu Q … Maniatis T (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58
  4. A striking organization of a large family of human neural cadherin-like cell adhesion genes. (PMID: 10380929) Wu Q … Maniatis T (Cell 1999) 3 58

Products for PCDHB19P Gene

Sources for PCDHB19P Gene

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