Aliases for PCDHB19P Gene

Aliases for PCDHB19P Gene

  • Protocadherin Beta 19 Pseudogene 2 3 5
  • PCDH-PSI5 2 3
  • PCDHB19P 5
  • PCDHB19 3

External Ids for PCDHB19P Gene

Previous GeneCards Identifiers for PCDHB19P Gene

  • GC05P140435
  • GC05P141202
  • GC05P140603
  • GC05P140647
  • GC05P140606
  • GC05P140612
  • GC05P140615
  • GC05P140619
  • GC05P140625
  • GC05P140629
  • GC05P140633
  • GC05P140636
  • GC05P140639
  • GC05P140643
  • GC05P140646
  • GC05P140650
  • GC05P141357
  • GC05P141506
  • GC05P142433
  • GC05P142537
  • GC05P142648
  • GC05P142847
  • GC05P141612
  • GC05P141715
  • GC05P141814
  • GC05P141913
  • GC05P142021
  • GC05P142126
  • GC05P142227
  • GC05P142329

Summaries for PCDHB19P Gene

GeneCards Summary for PCDHB19P Gene

PCDHB19P (Protocadherin Beta 19 Pseudogene) is a Pseudogene.

Additional gene information for PCDHB19P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PCDHB19P Gene

Genomics for PCDHB19P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PCDHB19P Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PCDHB19P on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the PCDHB19P gene promoter:
  • E47
  • GR
  • GR-alpha
  • GR-beta
  • Ik-2
  • LUN-1
  • Nkx2-5
  • POU3F2
  • PPAR-alpha
  • YY1

Genomic Locations for PCDHB19P Gene

Genomic Locations for PCDHB19P Gene
chr5:141,239,923-141,244,752
(GRCh38/hg38)
Size:
4,830 bases
Orientation:
Plus strand
chr5:140,619,518-140,624,320
(GRCh37/hg19)
Size:
4,803 bases
Orientation:
Plus strand

Genomic View for PCDHB19P Gene

Genes around PCDHB19P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCDHB19P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCDHB19P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCDHB19P Gene

Proteins for PCDHB19P Gene

Post-translational modifications for PCDHB19P Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCDHB19P Gene

Domains & Families for PCDHB19P Gene

Gene Families for PCDHB19P Gene

genes like me logo Genes that share domains with PCDHB19P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PCDHB19P Gene

Function for PCDHB19P Gene

Phenotypes From GWAS Catalog for PCDHB19P Gene

Animal Model Products

CRISPR Products

miRNA for PCDHB19P Gene

miRTarBase miRNAs that target PCDHB19P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PCDHB19P Gene

Localization for PCDHB19P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCDHB19P Gene

Pathways & Interactions for PCDHB19P Gene

PathCards logo

SuperPathways for PCDHB19P Gene

No Data Available

Gene Ontology (GO) - Biological Process for PCDHB19P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PCDHB19P Gene

Drugs & Compounds for PCDHB19P Gene

No Compound Related Data Available

Transcripts for PCDHB19P Gene

mRNA/cDNA for PCDHB19P Gene

1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PCDHB19P Gene

No ASD Table

Relevant External Links for PCDHB19P Gene

GeneLoc Exon Structure for
PCDHB19P

Expression for PCDHB19P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PCDHB19P Gene

mRNA differential expression in normal tissues according to GTEx for PCDHB19P Gene

This gene is overexpressed in Testis (x23.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PCDHB19P

SOURCE GeneReport for Unigene cluster for PCDHB19P Gene:

Hs.570898
genes like me logo Genes that share expression patterns with PCDHB19P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCDHB19P Gene

Orthologs for PCDHB19P Gene

Evolution for PCDHB19P Gene

ENSEMBL:
Gene Tree for PCDHB19P (if available)
TreeFam:
Gene Tree for PCDHB19P (if available)

No data available for Orthologs for PCDHB19P Gene

Paralogs for PCDHB19P Gene

No data available for Paralogs for PCDHB19P Gene

Variants for PCDHB19P Gene

Structural Variations from Database of Genomic Variants (DGV) for PCDHB19P Gene

Variant ID Type Subtype PubMed ID
esv2759382 CNV gain 17122850
nsv1024594 CNV loss 25217958
nsv428127 CNV loss 18775914
nsv471634 CNV gain+loss 15918152
nsv599908 CNV loss 21841781
nsv964960 CNV duplication 23825009

Additional Variant Information for PCDHB19P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCDHB19P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for PCDHB19P Gene

Disorders for PCDHB19P Gene

Additional Disease Information for PCDHB19P

No disorders were found for PCDHB19P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PCDHB19P Gene

Publications for PCDHB19P Gene

  1. Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. (PMID: 11230163) Wu Q … Maniatis T (Genome research 2001) 2 3
  2. The human and murine protocadherin-beta one-exon gene families show high evolutionary conservation, despite the difference in gene number. (PMID: 11322959) Vanhalst K … van Roy F (FEBS letters 2001) 2 3
  3. Large exons encoding multiple ectodomains are a characteristic feature of protocadherin genes. (PMID: 10716726) Wu Q … Maniatis T (Proceedings of the National Academy of Sciences of the United States of America 2000) 3
  4. A striking organization of a large family of human neural cadherin-like cell adhesion genes. (PMID: 10380929) Wu Q … Maniatis T (Cell 1999) 3

Products for PCDHB19P Gene

Sources for PCDHB19P Gene