Aliases for PCDH9-AS3 Gene

Data sources for PCDH9-AS3 Gene:

RNA type for PCDH9-AS3 Gene

lncRNA

Aliases for PCDH9-AS3 Gene

External Ids for PCDH9-AS3 Gene

Previous GeneCards Identifiers for PCDH9-AS3 Gene

  • GC00U933441
  • GC13P067552

Summaries for PCDH9-AS3 Gene

GeneCards Summary for PCDH9-AS3 Gene

PCDH9-AS3 (PCDH9 Antisense RNA 3) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are Actin Nucleation by ARP-WASP Complex and ERK Signaling.

Additional gene information for PCDH9-AS3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PCDH9-AS3 Gene

Genomics for PCDH9-AS3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PCDH9-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J067047 Enhancer 1 Ensembl ENCODE dbSUPER 10.7 +71.4 71400 1.6 FEZF1 BATF EGR1 IKZF1 TRIM28 ZNF561 L3MBTL2 PKNOX1 EGR2 LEF1 HSALNG0097702 PCDH9 PCDH9-AS3 lnc-KLHL1-10
GH13J066885 Enhancer 0.7 FANTOM5 Ensembl 10.1 -90.7 -90690 1.8 BHLHE40 IKZF1 SPI1 MTA2 PRDM10 IKZF2 PCDH9-AS3 PCDH9 lnc-BORA-33 PCDH9-AS2
GH13J067023 Enhancer 0.6 Ensembl ENCODE 10.8 +46.2 46213 1.6 FEZF1 BMI1 RFX1 ZBTB17 SCRT2 WT1 PCDH9-AS4 PCDH9-AS3 PCDH9 piR-48759-080
GH13J067061 Enhancer 0.7 Ensembl dbSUPER 10.4 +84.8 84813 0.8 IKZF1 FOXK2 TRIM28 L3MBTL2 ZNF660 ELF4 USF1 PCDH9 PCDH9-AS3 HSALNG0097702 lnc-KLHL1-10
GH13J067039 Enhancer 0.6 dbSUPER 11.1 +65.0 64959 6.6 CEBPB FEZF1 BHLHE40 TARDBP MYNN PRDM6 SUZ12 SP7 TRIM28 ZNF384 PCDH9-AS3 PCDH9 HSALNG0097702 piR-48759-080
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PCDH9-AS3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PCDH9-AS3 Gene

Latest Assembly
chr13:66,977,388-66,986,049
(GRCh38/hg38)
Size:
8,662 bases
Orientation:
Plus strand

Previous Assembly
chr13:67,551,521-67,559,908
(GRCh37/hg19 by Entrez Gene)
Size:
8,388 bases
Orientation:
Plus strand

chr13:67,551,564-67,559,908
(GRCh37/hg19 by Ensembl)
Size:
8,345 bases
Orientation:
Plus strand

Genomic View for PCDH9-AS3 Gene

Genes around PCDH9-AS3 on UCSC Golden Path with GeneCards custom track
PCDH9-AS3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PCDH9-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCDH9-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCDH9-AS3 Gene

Proteins for PCDH9-AS3 Gene

Post-translational modifications for PCDH9-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCDH9-AS3 Gene

Domains & Families for PCDH9-AS3 Gene

Gene Families for PCDH9-AS3 Gene

genes like me logo Genes that share domains with PCDH9-AS3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PCDH9-AS3 Gene

Function for PCDH9-AS3 Gene

Phenotypes From GWAS Catalog for PCDH9-AS3 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCDH9-AS3 Gene

Localization for PCDH9-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCDH9-AS3 Gene

Pathways & Interactions for PCDH9-AS3 Gene

PathCards logo

SuperPathways for PCDH9-AS3 Gene

SuperPathway Contained pathways
1 ERK Signaling
.61
2 Actin Nucleation by ARP-WASP Complex
.35
genes like me logo Genes that share pathways with PCDH9-AS3: view

Pathways by source for PCDH9-AS3 Gene

2 Qiagen pathways for PCDH9-AS3 Gene
  • Rho Family GTPases
  • RhoA Pathway

Gene Ontology (GO) - Biological Process for PCDH9-AS3 Gene

None

No data available for Interacting Proteins and SIGNOR curated interactions for PCDH9-AS3 Gene

Drugs & Compounds for PCDH9-AS3 Gene

No Compound Related Data Available

Transcripts for PCDH9-AS3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PCDH9-AS3 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075B33E_9606 lncRNA 525 4

RefSeq: NR_046636,

LncBook: HSALNT0203184,

LNCipedia: PCDH9-AS3:1,

NONCODE: NONHSAT034215.2,

URS000046A04F_9606 lncRNA 482 3

Ensembl: ENST00000434073 (view in UCSC) ,

LncBook: HSALNT0203186,

LNCipedia: PCDH9-AS3:2,

URS00009BE0BE_9606 lncRNA 479 2

LncBook: HSALNT0203185,

NONCODE: NONHSAT165851.1,

URS0000E9FAC3_9606 lncRNA 651 1

LncBook: HSALNT0203188,

URS0001BF0B0E_9606 lncRNA 651 1

LncBook: HSALNT0203188,

PCDH9-AS3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PCDH9-AS3 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PCDH9-AS3 Gene

No ASD Table

Relevant External Links for PCDH9-AS3 Gene

GeneLoc Exon Structure for
PCDH9-AS3

Expression for PCDH9-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PCDH9-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for PCDH9-AS3 Gene

This gene is overexpressed in Testis (x40.8).

SOURCE GeneReport for Unigene cluster for PCDH9-AS3 Gene:

Hs.577908
genes like me logo Genes that share expression patterns with PCDH9-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCDH9-AS3 Gene

Orthologs for PCDH9-AS3 Gene

Evolution for PCDH9-AS3 Gene

ENSEMBL:
Gene Tree for PCDH9-AS3 (if available)
TreeFam:
Gene Tree for PCDH9-AS3 (if available)
Alliance of Genome Resources:
Additional Orthologs for PCDH9-AS3

No data available for Orthologs for PCDH9-AS3 Gene

Paralogs for PCDH9-AS3 Gene

No data available for Paralogs for PCDH9-AS3 Gene

Variants for PCDH9-AS3 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PCDH9-AS3 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for PCDH9-AS3 Gene

Variant ID Type Subtype PubMed ID
nsv832640 CNV gain 17160897

Additional Variant Information for PCDH9-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCDH9-AS3
Leiden Open Variation Database (LOVD)
PCDH9-AS3

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PCDH9-AS3 Gene

Disorders for PCDH9-AS3 Gene

Additional Disease Information for PCDH9-AS3

No disorders were found for PCDH9-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PCDH9-AS3 Gene

Publications for PCDH9-AS3 Gene

No publications were found for PCDH9-AS3 Gene.

Products for PCDH9-AS3 Gene

Sources for PCDH9-AS3 Gene