Free for academic non-profit institutions. Other users need a Commercial license

PCBP1-AS1 Gene(RNA Gene)

PCBP1 Antisense RNA 1

GCID:
GC02M069962
GIFtS:
16
Genes Participants
UDN Logo

Aliases for PCBP1-AS1 Gene

Subcategory (RNA class) for PCBP1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for PCBP1-AS1 Gene

  • PCBP1 Antisense RNA 1 2 3 5
  • PCBP1 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for PCBP1-AS1 Gene

Previous GeneCards Identifiers for PCBP1-AS1 Gene

  • GC02M070191

Summaries for PCBP1-AS1 Gene

GeneCards Summary for PCBP1-AS1 Gene

PCBP1-AS1 (PCBP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PCBP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCBP1-AS1 Gene

Genomics for PCBP1-AS1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for PCBP1-AS1 Gene

Promoters and enhancers for PCBP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J070102 Enhancer 1.4 Ensembl ENCODE dbSUPER 650.7 -1.1 -1116 2.9 HDGF PKNOX1 SMAD1 ARNT ARID4B DMAP1 YBX1 IRF4 YY1 ZNF766 GC02P070103 PCBP1-AS1 MRPL36P1 TEX261 CD207 CLEC4F MXD1 SNRNP27 GC02P070112 GC02P069822
GH02J070080 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 45.6 +16.8 16829 11.6 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF143 SP3 MEF2D PCBP1 TIA1 PCBP1-AS1 TEX261 C2orf42 CLEC4F GMCL1 ANKRD53 MXD1 SNRNP27
GH02J070291 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 34 -190.0 -189982 4.1 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SNRPG CLEC4F TEX261 PCBP1-AS1 TIA1 GMCL1 CD207 PCYOX1 C2orf42 NAGK
GH02J070246 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 32.3 -145.0 -145041 3.3 HDGF PKNOX1 SMAD1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 TIA1 C2orf42 TRG-CCC2-1 PCBP1-AS1 TEX261 GMCL1 CLEC4F ANKRD53 MPHOSPH10 CD207
GH02J069974 Enhancer 1.6 FANTOM5 Ensembl ENCODE 35.9 +125.7 125685 6 HDGF FOXA2 PKNOX1 CLOCK ARNT NEUROD1 YBX1 DMAP1 ZBTB7B YY1 PIR52583 MXD1 PCBP1-AS1 TIA1 CLEC4F GMCL1 C2orf42 FAM136A SNRNP27 ASPRV1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PCBP1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PCBP1-AS1 Gene

Genomic Locations for PCBP1-AS1 Gene
chr2:69,962,263-70,103,220
(GRCh38/hg38)
Size:
140,958 bases
Orientation:
Minus strand
chr2:70,189,395-70,315,978
(GRCh37/hg19)
Size:
126,584 bases
Orientation:
Minus strand

Genomic View for PCBP1-AS1 Gene

Genes around PCBP1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCBP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCBP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PCBP1-AS1 Gene

Proteins for PCBP1-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for PCBP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCBP1-AS1 Gene

Domains & Families for PCBP1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PCBP1-AS1 Gene

Function for PCBP1-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for PCBP1-AS1 Gene

Phenotypes for PCBP1-AS1 Gene

GenomeRNAi human phenotypes for PCBP1-AS1:
genes like me logo Genes that share phenotypes with PCBP1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCBP1-AS1 Gene

Localization for PCBP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCBP1-AS1 Gene

Pathways & Interactions for PCBP1-AS1 Gene

SuperPathways for PCBP1-AS1 Gene

PathCards logo More details on SuperPathways for PCBP1-AS1
No Data Available

Interacting Proteins for PCBP1-AS1 Gene

Gene Ontology (GO) - Biological Process for PCBP1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PCBP1-AS1 Gene

Drugs & Compounds for PCBP1-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for PCBP1-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for PCBP1-AS1 Gene

(8) Additional mRNA sequences :
(225) Selected AceView cDNA sequences:
(170) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(170) RNA Central transcripts :

Unigene Clusters for PCBP1-AS1 Gene

PCBP1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PCBP1-AS1 Gene

No ASD Table

Relevant External Links for PCBP1-AS1 Gene

GeneLoc Exon Structure for
PCBP1-AS1
ECgene alternative splicing isoforms for
PCBP1-AS1

Expression for PCBP1-AS1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PCBP1-AS1 Gene

mRNA expression in normal human tissues for PCBP1-AS1 Gene
mRNA expression by GTEx for PCBP1-AS1 Gene

SOURCE GeneReport for Unigene cluster for PCBP1-AS1 Gene:

Hs.683864
genes like me logo Genes that share expression patterns with PCBP1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCBP1-AS1 Gene

Orthologs for PCBP1-AS1 Gene

Evolution for PCBP1-AS1 Gene

ENSEMBL:
Gene Tree for PCBP1-AS1 (if available)
TreeFam:
Gene Tree for PCBP1-AS1 (if available)

No data available for Orthologs for PCBP1-AS1 Gene

Paralogs for PCBP1-AS1 Gene

No data available for Paralogs for PCBP1-AS1 Gene

Variants for PCBP1-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for PCBP1-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs797044899 likely-pathogenic, Inborn genetic diseases 70,088,293(-) C/T upstream_transcript_variant
rs1000054458 -- 69,985,078(-) G/C intron_variant
rs1000084494 -- 70,022,709(-) A/G/T intron_variant
rs1000113710 -- 69,991,513(-) C/T intron_variant
rs1000138046 -- 70,059,189(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PCBP1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2671944 CNV deletion 23128226
esv2673067 CNV deletion 23128226
esv3383426 CNV duplication 20981092
esv3558310 CNV deletion 23714750
esv3583857 CNV loss 25503493
esv3591196 CNV loss 21293372
esv3591197 CNV loss 21293372
esv3591198 CNV loss 21293372
esv3591199 CNV loss 21293372
esv3591200 CNV loss 21293372
nsv471818 CNV novel sequence insertion 20440878
nsv953143 CNV duplication 24416366

Additional Variant Information for PCBP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCBP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PCBP1-AS1 Gene

Disorders for PCBP1-AS1 Gene

Additional Disease Information for PCBP1-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for PCBP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PCBP1-AS1 Gene

Publications for PCBP1-AS1 Gene

  1. Identification and evaluation of lncRNA and mRNA integrative modules in human peripheral blood mononuclear cells. (PMID: 28621149) Mo XB … Lei SF (Epigenomics 2017) 2 3 58
  2. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini AA … Barker JN (Nature communications 2014) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for PCBP1-AS1 Gene

Sources for PCBP1-AS1 Gene

Content
Loading form....