Aliases for PCBP1-AS1 Gene

Subcategory (RNA class) for PCBP1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PCBP1-AS1 Gene

  • PCBP1 Antisense RNA 1 2 3 5
  • PCBP1-AS1 2 5 165
  • PCBP1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • HSALNG0015768 164

External Ids for PCBP1-AS1 Gene

Previous GeneCards Identifiers for PCBP1-AS1 Gene

  • GC02M070191

Summaries for PCBP1-AS1 Gene

GeneCards Summary for PCBP1-AS1 Gene

PCBP1-AS1 (PCBP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PCBP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PCBP1-AS1 Gene

Genomics for PCBP1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PCBP1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PCBP1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PCBP1-AS1 Gene

Genomic Locations for PCBP1-AS1 Gene
chr2:69,959,821-70,103,220
(GRCh38/hg38)
Size:
143,400 bases
Orientation:
Minus strand
chr2:70,189,395-70,315,978
(GRCh37/hg19)
Size:
126,584 bases
Orientation:
Minus strand

Genomic View for PCBP1-AS1 Gene

Genes around PCBP1-AS1 on UCSC Golden Path with GeneCards custom track
PCBP1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PCBP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCBP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCBP1-AS1 Gene

Proteins for PCBP1-AS1 Gene

Post-translational modifications for PCBP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCBP1-AS1 Gene

Domains & Families for PCBP1-AS1 Gene

Gene Families for PCBP1-AS1 Gene

genes like me logo Genes that share domains with PCBP1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PCBP1-AS1 Gene

Function for PCBP1-AS1 Gene

Phenotypes From GWAS Catalog for PCBP1-AS1 Gene

Phenotypes for PCBP1-AS1 Gene

GenomeRNAi human phenotypes for PCBP1-AS1:
genes like me logo Genes that share phenotypes with PCBP1-AS1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCBP1-AS1 Gene

Localization for PCBP1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PCBP1-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCBP1-AS1 Gene

Pathways & Interactions for PCBP1-AS1 Gene

PathCards logo

SuperPathways for PCBP1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PCBP1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PCBP1-AS1 Gene

Drugs & Compounds for PCBP1-AS1 Gene

No Compound Related Data Available

Transcripts for PCBP1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PCBP1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000D57186_9606 lncRNA 2457 3

Ensembl: ENST00000416395 (view in UCSC) ,

LncBook: HSALNT0033587,

LNCipedia: PCBP1-AS1:282,

URS0000A95E67_9606 lncRNA 1257 3

Ensembl: ENST00000627327 (view in UCSC) ,

LncBook: HSALNT0033462,

LNCipedia: PCBP1-AS1:133,

URS0000090FF9_9606 lncRNA 1197 3

Ensembl: ENST00000594376 (view in UCSC) ,

LncBook: HSALNT0033504,

LNCipedia: PCBP1-AS1:170,

URS0000A9FCFC_9606 lncRNA 1194 3

Ensembl: ENST00000452431 (view in UCSC) ,

LncBook: HSALNT0033528,

LNCipedia: PCBP1-AS1:6,

URS0000AA6B9E_9606 lncRNA 1146 3

Ensembl: ENST00000627918 (view in UCSC) ,

LncBook: HSALNT0033464,

LNCipedia: PCBP1-AS1:97,

PCBP1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PCBP1-AS1 Gene

4 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PCBP1-AS1 Gene

No ASD Table

Relevant External Links for PCBP1-AS1 Gene

GeneLoc Exon Structure for
PCBP1-AS1

Expression for PCBP1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PCBP1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PCBP1-AS1

SOURCE GeneReport for Unigene cluster for PCBP1-AS1 Gene:

Hs.683864
genes like me logo Genes that share expression patterns with PCBP1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCBP1-AS1 Gene

Orthologs for PCBP1-AS1 Gene

Evolution for PCBP1-AS1 Gene

ENSEMBL:
Gene Tree for PCBP1-AS1 (if available)
TreeFam:
Gene Tree for PCBP1-AS1 (if available)

No data available for Orthologs for PCBP1-AS1 Gene

Paralogs for PCBP1-AS1 Gene

No data available for Paralogs for PCBP1-AS1 Gene

Variants for PCBP1-AS1 Gene

Additional dbSNP identifiers (rs#s) for PCBP1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PCBP1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2671944 CNV deletion 23128226
esv2673067 CNV deletion 23128226
esv3383426 CNV duplication 20981092
esv3558310 CNV deletion 23714750
esv3583857 CNV loss 25503493
esv3591196 CNV loss 21293372
esv3591197 CNV loss 21293372
esv3591198 CNV loss 21293372
esv3591199 CNV loss 21293372
esv3591200 CNV loss 21293372
nsv471818 CNV novel sequence insertion 20440878
nsv953143 CNV duplication 24416366

Additional Variant Information for PCBP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCBP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PCBP1-AS1 Gene

Disorders for PCBP1-AS1 Gene

No disorders were found for PCBP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PCBP1-AS1 Gene

Publications for PCBP1-AS1 Gene

  1. Identification and evaluation of lncRNA and mRNA integrative modules in human peripheral blood mononuclear cells. (PMID: 28621149) Mo XB … Lei SF (Epigenomics 2017) 2 3
  2. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini AA … Barker JN (Nature communications 2014) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for PCBP1-AS1 Gene

Sources for PCBP1-AS1 Gene