Aliases for PCAT7 Gene

Subcategory (RNA class) for PCAT7 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for PCAT7 Gene

  • Prostate Cancer Associated Transcript 7 2 3 5
  • Prostate Cancer Associated Transcript 7 (Non-Protein Coding) 2 3
  • Prostate Cancer-Associated Noncoding RNA 2 2 3
  • PCAN-R2 2 3
  • PCAT7 2 5
  • NONHSAG052908.2 91
  • HSALNG0072923 164

External Ids for PCAT7 Gene

Previous GeneCards Identifiers for PCAT7 Gene

  • GC09P097317
  • GC00U935535

Summaries for PCAT7 Gene

GeneCards Summary for PCAT7 Gene

PCAT7 (Prostate Cancer Associated Transcript 7) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PCAT7 include Nasopharyngeal Carcinoma and Prostate Cancer.

Additional gene information for PCAT7 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PCAT7 Gene

Genomics for PCAT7 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PCAT7 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J094553 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 600.7 0.0 -19 3.6 CREB1 GATAD2A CTCF ZBTB33 ZNF512 ZHX2 PRDM1 RBFOX2 POLR2A REST PCAT7 lnc-FBP2-1 MFSD14B FBP2 ENSG00000232063 ZNF169 RF00017-7724
GH09J094602 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 0.3 +49.0 49012 2.7 CREB1 GATAD2A CTCF TEAD4 ZNF629 JUND ZNF143 REST RAD21 RCOR1 FBP1 MFSD14B FBP2 RF00017-7728 PCAT7
GH09J094593 Promoter/Enhancer 0.8 EPDnew Ensembl ENCODE 0.3 +38.8 38789 1.7 FBP2 MFSD14B ZNF169 RF00017-7728 PCAT7 FBP1 RF00017-7724
GH09J094600 Enhancer 0.8 Ensembl ENCODE 0.3 +45.6 45557 0.8 SP1 GABPA YY1 ZBTB33 JUND NR2F2 SAP130 GABPB1 RAD21 HNF4A FBP1 FBP2 RF00017-7728 PCAT7
GH09J094584 Enhancer 0.5 Ensembl 0.3 +29.9 29857 0.2 IKZF2 DPF2 RELB RUNX3 ARNT MTA2 BHLHE40 TCF7 IKZF1 RF00017-7727 piR-38580-388 FBP1 FBP2 lnc-MFSD14B-14 PCAT7 MFSD14B RF00017-7724
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PCAT7 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PCAT7 Gene

Genomic Locations for PCAT7 Gene
chr9:94,555,044-94,603,990
(GRCh38/hg38)
Size:
48,947 bases
Orientation:
Plus strand

Genomic View for PCAT7 Gene

Genes around PCAT7 on UCSC Golden Path with GeneCards custom track
PCAT7 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PCAT7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCAT7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCAT7 Gene

Proteins for PCAT7 Gene

No data available for DME Specific Peptides for PCAT7 Gene

Domains & Families for PCAT7 Gene

Gene Families for PCAT7 Gene

genes like me logo Genes that share domains with PCAT7: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PCAT7 Gene

Function for PCAT7 Gene

Phenotypes From GWAS Catalog for PCAT7 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCAT7 Gene

Localization for PCAT7 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PCAT7 gene
Compartment Confidence
plasma membrane 1
extracellular 1
cytoskeleton 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCAT7 Gene

Pathways & Interactions for PCAT7 Gene

PathCards logo

SuperPathways for PCAT7 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PCAT7 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PCAT7 Gene

Drugs & Compounds for PCAT7 Gene

No Compound Related Data Available

Transcripts for PCAT7 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PCAT7 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A76AD1_9606 lncRNA 1937 2

HGNC: 48824,

RefSeq: NR_121566,

URS0000D60957_9606 lncRNA 3974 1

Ensembl: ENST00000644721 (view in UCSC) ,

URS0000D60DC7_9606 lncRNA 2342 1

Ensembl: ENST00000647389 (view in UCSC) ,

URS0000A763F0_9606 lncRNA 1852 1

RefSeq: NR_121567,

URS0000A76486_9606 lncRNA 1817 1

RefSeq: NR_121569,

PCAT7 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PCAT7 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PCAT7 Gene

No ASD Table

Relevant External Links for PCAT7 Gene

GeneLoc Exon Structure for
PCAT7

Expression for PCAT7 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PCAT7

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCAT7 Gene

Orthologs for PCAT7 Gene

Evolution for PCAT7 Gene

ENSEMBL:
Gene Tree for PCAT7 (if available)
TreeFam:
Gene Tree for PCAT7 (if available)

No data available for Orthologs for PCAT7 Gene

Paralogs for PCAT7 Gene

No data available for Paralogs for PCAT7 Gene

Variants for PCAT7 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PCAT7 Gene

SNP ID Clinical significance and condition Chr 09 pos Variation AA Info Type
776436 Benign: not provided 94,567,300(+) A/G SYNONYMOUS_VARIANT
786143 Benign: not provided 94,558,939(+) T/C STOP_LOST,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for PCAT7 Gene

Structural Variations from Database of Genomic Variants (DGV) for PCAT7 Gene

Variant ID Type Subtype PubMed ID
dgv1493e214 CNV gain 21293372
esv25012 CNV loss 19812545
esv2761545 CNV gain 21179565
esv3576685 CNV gain 25503493
esv3621113 CNV gain 21293372
nsv1124452 CNV deletion 24896259
nsv1147999 OTHER inversion 26484159
nsv950902 CNV deletion 24416366
nsv972786 CNV duplication 23825009

Additional Variant Information for PCAT7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCAT7

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PCAT7 Gene

Disorders for PCAT7 Gene

MalaCards: The human disease database

(4) MalaCards diseases for PCAT7 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
nasopharyngeal carcinoma
  • npc
prostate cancer
  • prostate cancer, somatic
lung cancer
  • adenocarcinoma of lung
renal cell carcinoma, nonpapillary
  • rcc
- elite association - COSMIC cancer census association via MalaCards
Search PCAT7 in MalaCards View complete list of genes associated with diseases
genes like me logo Genes that share disorders with PCAT7: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PCAT7 Gene

Publications for PCAT7 Gene

  1. Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer. (PMID: 23728290) Du Z … Liu XS (Nature structural & molecular biology 2013) 2 3
  2. Long non-coding RNA PCAT7 regulates ELF2 signaling through inhibition of miR-134-5p in nasopharyngeal carcinoma. (PMID: 28728844) Liu Y … Zhang C (Biochemical and biophysical research communications 2017) 3
  3. Long Non-Coding RNA Prostate Cancer-Associated Transcript 7 (PCAT7) Induces Poor Prognosis and Promotes Tumorigenesis by Inhibiting mir-134-5p in Non-Small-Cell Lung (NSCLC). (PMID: 29275424) Liu Q … Zou J (Medical science monitor : international medical journal of experimental and clinical research 2017) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for PCAT7 Gene

Sources for PCAT7 Gene