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Aliases for PCAT6 Gene

Subcategory (RNA class) for PCAT6 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PCAT6 Gene

  • Prostate Cancer Associated Transcript 6 (Non-Protein Coding) 2 3 5
  • Prostate Cancer-Associated Noncoding RNA 1 2 3
  • KDM5B Antisense RNA 1 (Head To Head) 2 3
  • KDM5B Antisense RNA 1 (Non-Protein Coding) 3
  • Noncoding RNA-Activating 2 3
  • Onco-LncRNA-96 3
  • KDM5B-AS1 3
  • KDM5BAS1 3
  • NcRNA-A2 3
  • PCAN-R1 3

External Ids for PCAT6 Gene

Previous HGNC Symbols for PCAT6 Gene

  • KDM5B-AS1

Previous GeneCards Identifiers for PCAT6 Gene

  • GC01P202786

Summaries for PCAT6 Gene

GeneCards Summary for PCAT6 Gene

PCAT6 (Prostate Cancer Associated Transcript 6 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PCAT6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCAT6 Gene

Genomics for PCAT6 Gene

GeneHancer (GH) Regulatory Elements for PCAT6 Gene

Promoters and enhancers for PCAT6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I202809 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 560.8 +0.7 691 3.6 PKNOX1 CLOCK SMAD1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 PCAT6 ENSG00000260021 KDM5B RNPEP ENSG00000273478 HNRNPA1P59 LAX1 MGAT4EP
GH01I202802 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 12.2 -5.0 -4958 6.1 MLX ZFP64 YBX1 FEZF1 DMAP1 IRF4 YY1 ZNF213 ZNF143 ZNF548 KDM5B ZC3H11A ZBED6 RNPEP PCAT6 LOC100506672 ENSG00000273478 HNRNPA1P59 ELF3-AS1 IPO9
GH01I202963 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9 +155.7 155708 6.6 HDGF PKNOX1 CLOCK ARNT ARID4B SIN3A YBX1 ZBTB7B ZNF766 ZNF143 CYB5R1 BTG2 ZC3H11A KLHL12 LOC100506747 ADIPOR1 ELF3-AS1 PCAT6 KDM5B LOC148709
GH01I202956 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 9.5 +148.7 148737 6.8 HDGF PKNOX1 ARNT SIN3A ZNF2 ZNF213 E2F8 ZNF207 FOS KLF13 ADIPOR1 KLHL12 CYB5R1 LOC100506747 PTPRVP PCAT6 KDM5B LOC148709 GC01M202941
GH01I203005 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.3 +196.1 196064 3.2 CLOCK ZFP64 DMAP1 IRF4 YY1 E2F8 SP3 NFYC MEF2D GLIS1 LOC100506747 TMEM183A KDM5B ZC3H11A ELF3-AS1 KLHL12 CYB5R1 HNRNPA1P59 PCAT6 RPS27P8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PCAT6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PCAT6 Gene

Genomic Locations for PCAT6 Gene
chr1:202,810,946-202,812,156
(GRCh38/hg38)
Size:
1,211 bases
Orientation:
Plus strand
chr1:202,780,074-202,781,284
(GRCh37/hg19)

Genomic View for PCAT6 Gene

Genes around PCAT6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCAT6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCAT6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCAT6 Gene

Proteins for PCAT6 Gene

Post-translational modifications for PCAT6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCAT6 Gene

Domains & Families for PCAT6 Gene

Gene Families for PCAT6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PCAT6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PCAT6 Gene

Function for PCAT6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCAT6 Gene

Localization for PCAT6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCAT6 Gene

Pathways & Interactions for PCAT6 Gene

SuperPathways for PCAT6 Gene

No Data Available

Interacting Proteins for PCAT6 Gene

Gene Ontology (GO) - Biological Process for PCAT6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PCAT6 Gene

Drugs & Compounds for PCAT6 Gene

No Compound Related Data Available

Transcripts for PCAT6 Gene

mRNA/cDNA for PCAT6 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PCAT6 Gene

No ASD Table

Relevant External Links for PCAT6 Gene

GeneLoc Exon Structure for
PCAT6
ECgene alternative splicing isoforms for
PCAT6

Expression for PCAT6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PCAT6 Gene

mRNA differential expression in normal tissues according to GTEx for PCAT6 Gene

This gene is overexpressed in Testis (x17.1).

NURSA nuclear receptor signaling pathways regulating expression of PCAT6 Gene:

PCAT6
genes like me logo Genes that share expression patterns with PCAT6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCAT6 Gene

Orthologs for PCAT6 Gene

Evolution for PCAT6 Gene

ENSEMBL:
Gene Tree for PCAT6 (if available)
TreeFam:
Gene Tree for PCAT6 (if available)

No data available for Orthologs for PCAT6 Gene

Paralogs for PCAT6 Gene

No data available for Paralogs for PCAT6 Gene

Variants for PCAT6 Gene

Sequence variations from dbSNP and Humsavar for PCAT6 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000139544 -- 202,812,387(+) G/T downstream_transcript_variant
rs1000878184 -- 202,811,352(+) G/A non_coding_transcript_variant
rs1001555099 -- 202,809,739(+) GACGGGGGACGGGGG/GACGGGGG upstream_transcript_variant
rs1001559841 -- 202,811,614(+) C/T intron_variant, non_coding_transcript_variant
rs1002393268 -- 202,811,000(+) G/A/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for PCAT6 Gene

Variant ID Type Subtype PubMed ID
nsv4110 CNV insertion 18451855
nsv521757 CNV loss 19592680
nsv832348 CNV loss 17160897
nsv832359 CNV loss 17160897

Additional Variant Information for PCAT6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCAT6

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PCAT6 Gene

Disorders for PCAT6 Gene

Additional Disease Information for PCAT6

No disorders were found for PCAT6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PCAT6 Gene

Publications for PCAT6 Gene

  1. Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer. (PMID: 23728290) Du Z … Liu XS (Nature structural & molecular biology 2013) 2 3 58
  2. Long noncoding RNAs with enhancer-like function in human cells. (PMID: 20887892) Ørom UA … Shiekhattar R (Cell 2010) 2 3 58
  3. Knockdown of Long Noncoding RNA PCAT6 Inhibits Proliferation and Invasion in Lung Cancer Cells. (PMID: 27458097) Wan L … Wang JJ (Oncology research 2016) 3 58
  4. Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function. (PMID: 25864709) Cabanski CR … Maher CA (RNA biology 2015) 3 58

Products for PCAT6 Gene

Sources for PCAT6 Gene

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