Aliases for PCAT5 Gene

Subcategory (RNA class) for PCAT5 Gene

lncRNA

Number of RNA Genes sources:

4 / 14

Aliases for PCAT5 Gene

  • Prostate Cancer Associated Transcript 5 2 3 5
  • Prostate Cancer Associated Transcript 5 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 1452 2 3
  • PCAT5 2 168
  • TPCAT-10-36067 3
  • NONHSAG005617 92
  • HSALNG0077290 167
  • LINC01452 3

External Ids for PCAT5 Gene

Previous HGNC Symbols for PCAT5 Gene

  • LINC01452

Previous GeneCards Identifiers for PCAT5 Gene

  • GC10U901861

Summaries for PCAT5 Gene

GeneCards Summary for PCAT5 Gene

PCAT5 (Prostate Cancer Associated Transcript 5) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PCAT5 include Prostate Cancer and Spontaneous Ocular Nystagmus.

Additional gene information for PCAT5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PCAT5 Gene

Genomics for PCAT5 Gene

GeneHancer (GH) Regulatory Elements for PCAT5 Gene

Promoters and enhancers for PCAT5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J035778 Enhancer 0.5 Ensembl 500.7 0.0 0 0.6 NR2F2 TCF12 ELF1 MTA2 IKZF1 IKZF2 PCAT5 FZD8 piR-57133-055
GH10J035783 Enhancer 0.9 VISTA Ensembl ENCODE 0.4 +5.9 5943 2.2 CEBPG FOS FOSL2 CEBPB SP1 FZD8 PCAT5 RF00017-653
GH10J035773 Enhancer 0.4 Ensembl 0.7 -4.4 -4400 0.2 NFIL3 ATF3 IKZF1 ATF1 piR-57133-055 PCAT5
GH10J035794 Enhancer 0.7 Ensembl 0.4 +17.2 17199 1.4 ZNF639 TRIM28 ZBTB17 ZNF184 FOS CEBPB ZFHX2 ZNF513 ZNF335 ZBTB48 RF00017-653 PCAT5
GH10J035790 Enhancer 0.3 ENCODE 0.4 +11.9 11947 0 FOS PCAT5 RF00017-653
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PCAT5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PCAT5 Gene

Genomic Locations for PCAT5 Gene
chr10:35,778,301-35,801,238
(GRCh38/hg38)
Size:
22,938 bases
Orientation:
Plus strand

Genomic View for PCAT5 Gene

Genes around PCAT5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCAT5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCAT5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCAT5 Gene

Proteins for PCAT5 Gene

Post-translational modifications for PCAT5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCAT5 Gene

Domains & Families for PCAT5 Gene

Gene Families for PCAT5 Gene

genes like me logo Genes that share domains with PCAT5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PCAT5 Gene

Function for PCAT5 Gene

Phenotypes From GWAS Catalog for PCAT5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCAT5 Gene

Localization for PCAT5 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PCAT5 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCAT5 Gene

Pathways & Interactions for PCAT5 Gene

PathCards logo

SuperPathways for PCAT5 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PCAT5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PCAT5 Gene

Drugs & Compounds for PCAT5 Gene

No Compound Related Data Available

Transcripts for PCAT5 Gene

mRNA/cDNA for PCAT5 Gene

5 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
1 ENA transcripts :
2 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PCAT5 Gene

No ASD Table

Relevant External Links for PCAT5 Gene

GeneLoc Exon Structure for
PCAT5

Expression for PCAT5 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCAT5 Gene

Orthologs for PCAT5 Gene

Evolution for PCAT5 Gene

ENSEMBL:
Gene Tree for PCAT5 (if available)
TreeFam:
Gene Tree for PCAT5 (if available)

No data available for Orthologs for PCAT5 Gene

Paralogs for PCAT5 Gene

No data available for Paralogs for PCAT5 Gene

Variants for PCAT5 Gene

Additional dbSNP identifiers (rs#s) for PCAT5 Gene

Structural Variations from Database of Genomic Variants (DGV) for PCAT5 Gene

Variant ID Type Subtype PubMed ID
nsv6354 CNV deletion 18451855

Additional Variant Information for PCAT5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCAT5

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PCAT5 Gene

Disorders for PCAT5 Gene

MalaCards: The human disease database

(3) MalaCards diseases for PCAT5 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, somatic
spontaneous ocular nystagmus
  • ocular nystagmus
meninges hemangiopericytoma
  • hemangiopericytoma of meninges
- elite association - COSMIC cancer census association via MalaCards
Search PCAT5 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for PCAT5

genes like me logo Genes that share disorders with PCAT5: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PCAT5 Gene

Publications for PCAT5 Gene

  1. Transcriptome Sequencing Reveals PCAT5 as a Novel ERG-Regulated Long Noncoding RNA in Prostate Cancer. (PMID: 26282172) Ylipää A … Nykter M (Cancer research 2015) 2 3 54

Products for PCAT5 Gene

Sources for PCAT5 Gene