Aliases for PCAT19 Gene

Subcategory (RNA class) for PCAT19 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PCAT19 Gene

  • Prostate Cancer Associated Transcript 19 2 3 5
  • PCAT19 2 5 165
  • Prostate Cancer Associated Transcript 19 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 1190 2 3
  • LINC01190 2 3
  • NONHSAG025867.2 91
  • HSALNG0126202 164

External Ids for PCAT19 Gene

Previous HGNC Symbols for PCAT19 Gene

  • LOC100505495

Previous GeneCards Identifiers for PCAT19 Gene

  • GC19M041962
  • GC19M041454
  • GC19M041569

Summaries for PCAT19 Gene

GeneCards Summary for PCAT19 Gene

PCAT19 (Prostate Cancer Associated Transcript 19) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PCAT19 include Laryngeal Benign Neoplasm and Prostate Cancer.

Additional gene information for PCAT19 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PCAT19 Gene

Genomics for PCAT19 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PCAT19 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J041499 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 631.9 +0.9 860 3.5 ZNF221 PRDM10 ZNF629 IKZF1 ZNF692 ZNF174 JUND ZNF300 PRDM1 ZIC2 PCAT19 NUMBL SNRPA HNRNPUL1 ZNF526 CCDC97 CYP2G1P MEGF8 ENSG00000269843 ZNF574
GH19J041477 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 627.8 +21.5 21460 3.6 JUND PKNOX1 MGA ZNF766 NFE2 NR2C2 GABPA FOSL1 EHMT2 NR2F2 PCAT19 ENSG00000268355 LINC01480 CEACAMP3 piR-49322-326 lnc-ERICH4-1 DMAC2 CEACAM21
GH19J041529 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 20.6 -30.2 -30223 2.9 SP1 CREB1 PRDM10 ZNF629 ZNF692 POLR2A ZNF174 TARDBP JUND FOXA1 ENSG00000268355 PCAT19 ZNF574 DMAC2 ERICH4 CIC LINC01480 NUMBL TGFB1 ARHGEF1
GH19J041516 Enhancer 0.6 dbSUPER 20.6 -15.4 -15367 2.5 RAD21 CTCF PKNOX1 CEBPA SOX13 CEBPB EZH2 IKZF1 CEBPG SPI1 HSALNG0126204 LINC01480 PCAT19 CEACAM21 DMAC2 ERICH4 BCKDHA EXOSC5 PLEKHA3P1
GH19J041882 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 5.1 -385.4 -385436 9.2 ZNF221 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF PRDM10 ZNF629 TFE3 ARHGEF1 ZNF526 HNRNPUL1 CCDC97 ZNF574 RPS19 RABAC1 MEGF8 AXL CIC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PCAT19 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PCAT19 Gene

Genomic Locations for PCAT19 Gene
chr19:41,449,520-41,501,223
(GRCh38/hg38)
Size:
51,704 bases
Orientation:
Minus strand
chr19:41,960,074-42,006,559
(GRCh37/hg19)
Size:
46,486 bases
Orientation:
Minus strand

Genomic View for PCAT19 Gene

Genes around PCAT19 on UCSC Golden Path with GeneCards custom track
PCAT19 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PCAT19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCAT19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCAT19 Gene

Proteins for PCAT19 Gene

Post-translational modifications for PCAT19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCAT19 Gene

Domains & Families for PCAT19 Gene

Gene Families for PCAT19 Gene

genes like me logo Genes that share domains with PCAT19: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PCAT19 Gene

Function for PCAT19 Gene

Phenotypes From GWAS Catalog for PCAT19 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCAT19 Gene

Localization for PCAT19 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PCAT19 gene
Compartment Confidence
extracellular 1
mitochondrion 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCAT19 Gene

Pathways & Interactions for PCAT19 Gene

PathCards logo

SuperPathways for PCAT19 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PCAT19 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PCAT19 Gene

Drugs & Compounds for PCAT19 Gene

No Compound Related Data Available

Transcripts for PCAT19 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PCAT19 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001209F3_9606 lncRNA 1232 4

Ensembl: ENST00000595837 (view in UCSC) ,

LncBook: HSALNT0260031,

LNCipedia: PCAT19:2, PCAT19:20,

NONCODE: NONHSAT066452.2,

URS0000782AA0_9606 lncRNA 596 3

Ensembl: ENST00000598215 (view in UCSC) ,

LNCipedia: PCAT19:11,

NONCODE: NONHSAT066455.2,

URS0000A776B1_9606 lncRNA 3476 2

HGNC: 49593,

RefSeq: NR_040109,

URS0000E8D7FD_9606 lncRNA 3477 1

Ensembl: ENST00000588495 (view in UCSC) ,

URS0000EEC94D_9606 lncRNA 2744 1

Ensembl: ENST00000650804 (view in UCSC) ,

PCAT19 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PCAT19 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PCAT19 Gene

No ASD Table

Relevant External Links for PCAT19 Gene

GeneLoc Exon Structure for
PCAT19

Expression for PCAT19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PCAT19 Gene

mRNA differential expression in normal tissues according to GTEx for PCAT19 Gene

This gene is overexpressed in Lung (x5.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PCAT19

genes like me logo Genes that share expression patterns with PCAT19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCAT19 Gene

Orthologs for PCAT19 Gene

Evolution for PCAT19 Gene

ENSEMBL:
Gene Tree for PCAT19 (if available)
TreeFam:
Gene Tree for PCAT19 (if available)

No data available for Orthologs for PCAT19 Gene

Paralogs for PCAT19 Gene

No data available for Paralogs for PCAT19 Gene

Variants for PCAT19 Gene

Additional dbSNP identifiers (rs#s) for PCAT19 Gene

Structural Variations from Database of Genomic Variants (DGV) for PCAT19 Gene

Variant ID Type Subtype PubMed ID
dgv3547n100 CNV loss 25217958
dgv3548n100 CNV loss 25217958
esv25601 CNV loss 19812545
esv2659224 CNV deletion 23128226
esv2672522 CNV deletion 23128226
esv2718575 CNV deletion 23290073
esv2760512 CNV loss 21179565
esv3644380 CNV loss 21293372
esv3644381 CNV loss 21293372
esv3644382 CNV loss 21293372
esv3644383 CNV loss 21293372
nsv1055515 CNV loss 25217958
nsv1057764 CNV gain+loss 25217958
nsv1060959 CNV loss 25217958
nsv442462 CNV loss 18776908
nsv480409 CNV novel sequence insertion 20440878
nsv510767 CNV deletion 20534489
nsv519523 CNV loss 19592680
nsv521657 CNV loss 19592680
nsv817838 CNV loss 17921354

Additional Variant Information for PCAT19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCAT19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PCAT19 Gene

Disorders for PCAT19 Gene

MalaCards: The human disease database

(2) MalaCards diseases for PCAT19 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
laryngeal benign neoplasm
  • laryngeal tumor
prostate cancer
  • prostate cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with PCAT19: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PCAT19 Gene

Publications for PCAT19 Gene

  1. Comprehensive functional annotation of 77 prostate cancer risk loci. (PMID: 24497837) Hazelett DJ … Coetzee GA (PLoS genetics 2014) 2 3
  2. Risk SNP-Mediated Promoter-Enhancer Switching Drives Prostate Cancer through lncRNA PCAT19. (PMID: 30033362) Hua JT … He HH (Cell 2018) 3
  3. A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease. (PMID: 23065704) Amin Al Olama A … Eeles RA (Human molecular genetics 2013) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for PCAT19 Gene

Sources for PCAT19 Gene