Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PCAT19 Gene

Subcategory (RNA class) for PCAT19 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for PCAT19 Gene

  • Prostate Cancer Associated Transcript 19 2 3 5
  • Prostate Cancer Associated Transcript 19 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 1190 2 3
  • LINC01190 3

External Ids for PCAT19 Gene

Previous HGNC Symbols for PCAT19 Gene

  • LOC100505495

Previous GeneCards Identifiers for PCAT19 Gene

  • GC19M041962

Summaries for PCAT19 Gene

GeneCards Summary for PCAT19 Gene

PCAT19 (Prostate Cancer Associated Transcript 19) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PCAT19 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCAT19 Gene

Genomics for PCAT19 Gene

GeneHancer (GH) Regulatory Elements for PCAT19 Gene

Promoters and enhancers for PCAT19 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J041499 Promoter/Enhancer 1.5 Ensembl ENCODE 631.9 +0.9 860 3.5 CBFA2T2 ZNF384 NFIB ZSCAN21 MAFK SP7 ZNF174 PRDM1 ZNF404 MZF1 PCAT19 NUMBL SNRPA HNRNPUL1 ZNF526 CCDC97 MEGF8 CYP2G1P ENSG00000269843 ZNF574
GH19J041529 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 20.6 -30.2 -30223 2.9 SP1 POLR2A ZNF174 CREM PRDM1 ZBED1 CREB1 GLIS2 PRDM10 TARDBP ENSG00000268355 PCAT19 ZNF574 DMAC2 ERICH4 CIC LINC01480 NUMBL TGFB1 ARHGEF1
GH19J041477 Promoter/Enhancer 1.2 Ensembl ENCODE 27.8 +21.5 21460 3.6 ZFX ZNF639 ATF1 PKNOX1 MGA NFE2 ZNF766 EHMT2 GABPA NR2C2 PCAT19 ENSG00000268355 LINC01480 CEACAMP3 GC19P041489 DMAC2
GH19J041534 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 16.4 -34.2 -34178 1.2 RELA CREM ZBED1 IKZF1 POLR2A IKZF2 DPF2 EED RUNX3 BCLAF1 LINC01480 CEACAM21 PCAT19 GC19M041536
GH19J041526 Enhancer 0.6 FANTOM5 Ensembl 20.6 -25.1 -25078 1.4 RNF2 ZBTB21 PCAT19 CEACAM21 DMAC2 ERICH4 EXOSC5 BCKDHA LINC01480 PLEKHA3P1 ENSG00000268355
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PCAT19 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PCAT19 Gene

Genomic Locations for PCAT19 Gene
chr19:41,449,520-41,501,223
(GRCh38/hg38)
Size:
51,704 bases
Orientation:
Minus strand
chr19:41,960,074-42,006,559
(GRCh37/hg19)
Size:
46,486 bases
Orientation:
Minus strand

Genomic View for PCAT19 Gene

Genes around PCAT19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCAT19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCAT19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCAT19 Gene

Proteins for PCAT19 Gene

Post-translational modifications for PCAT19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCAT19 Gene

Domains & Families for PCAT19 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PCAT19 Gene

Function for PCAT19 Gene

Phenotypes From GWAS Catalog for PCAT19 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCAT19 Gene

Localization for PCAT19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCAT19 Gene

Pathways & Interactions for PCAT19 Gene

PathCards logo

SuperPathways for PCAT19 Gene

No Data Available

Interacting Proteins for PCAT19 Gene

Gene Ontology (GO) - Biological Process for PCAT19 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PCAT19 Gene

Drugs & Compounds for PCAT19 Gene

No Compound Related Data Available

Transcripts for PCAT19 Gene

mRNA/cDNA for PCAT19 Gene

(2) Additional mRNA sequences :
(32) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PCAT19 Gene

No ASD Table

Relevant External Links for PCAT19 Gene

GeneLoc Exon Structure for
PCAT19
ECgene alternative splicing isoforms for
PCAT19

Expression for PCAT19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PCAT19 Gene

mRNA differential expression in normal tissues according to GTEx for PCAT19 Gene

This gene is overexpressed in Lung (x5.4).

NURSA nuclear receptor signaling pathways regulating expression of PCAT19 Gene:

PCAT19
genes like me logo Genes that share expression patterns with PCAT19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCAT19 Gene

Orthologs for PCAT19 Gene

Evolution for PCAT19 Gene

ENSEMBL:
Gene Tree for PCAT19 (if available)
TreeFam:
Gene Tree for PCAT19 (if available)

No data available for Orthologs for PCAT19 Gene

Paralogs for PCAT19 Gene

No data available for Paralogs for PCAT19 Gene

Variants for PCAT19 Gene

Sequence variations from dbSNP and Humsavar for PCAT19 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000012752 -- 41,472,348(-) T/C intron_variant
rs1000027854 -- 41,455,743(-) G/A/C non_coding_transcript_variant
rs1000033982 -- 41,487,067(-) A/G intron_variant
rs1000085604 -- 41,461,400(-) A/T intron_variant
rs1000104431 -- 41,477,124(-) GCCT/ intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PCAT19 Gene

Variant ID Type Subtype PubMed ID
dgv3547n100 CNV loss 25217958
dgv3548n100 CNV loss 25217958
esv25601 CNV loss 19812545
esv2659224 CNV deletion 23128226
esv2672522 CNV deletion 23128226
esv2718575 CNV deletion 23290073
esv2760512 CNV loss 21179565
esv3644380 CNV loss 21293372
esv3644381 CNV loss 21293372
esv3644382 CNV loss 21293372
esv3644383 CNV loss 21293372
nsv1055515 CNV loss 25217958
nsv1057764 CNV gain+loss 25217958
nsv1060959 CNV loss 25217958
nsv442462 CNV loss 18776908
nsv480409 CNV novel sequence insertion 20440878
nsv510767 CNV deletion 20534489
nsv519523 CNV loss 19592680
nsv521657 CNV loss 19592680
nsv817838 CNV loss 17921354

Additional Variant Information for PCAT19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCAT19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PCAT19 Gene

Disorders for PCAT19 Gene

Additional Disease Information for PCAT19

No disorders were found for PCAT19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PCAT19 Gene

Publications for PCAT19 Gene

  1. Comprehensive functional annotation of 77 prostate cancer risk loci. (PMID: 24497837) Hazelett DJ … Coetzee GA (PLoS genetics 2014) 2 3 58
  2. Risk SNP-Mediated Promoter-Enhancer Switching Drives Prostate Cancer through lncRNA PCAT19. (PMID: 30033362) Hua JT … He HH (Cell 2018) 3 58
  3. A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease. (PMID: 23065704) Amin Al Olama A … Eeles RA (Human molecular genetics 2013) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for PCAT19 Gene

Sources for PCAT19 Gene

Content
Loading form....