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Aliases for PCAT14 Gene

Subcategory (RNA class) for PCAT14 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for PCAT14 Gene

  • Prostate Cancer Associated Transcript 14 2 3 5
  • Prostate Cancer Associated Transcript 14 (Non-Protein Coding) 2 3

External Ids for PCAT14 Gene

Previous GeneCards Identifiers for PCAT14 Gene

  • GC22U900901
  • GC22P023538
  • GC22P023540

Summaries for PCAT14 Gene

GeneCards Summary for PCAT14 Gene

PCAT14 (Prostate Cancer Associated Transcript 14) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with PCAT14 include Prostate Cancer.

Additional gene information for PCAT14 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCAT14 Gene

Genomics for PCAT14 Gene

GeneHancer (GH) Regulatory Elements for PCAT14 Gene

Promoters and enhancers for PCAT14 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J023532 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 600.7 -0.7 -706 8.3 HDGF CC2D1A ZFX ELF3 CTCF CBFA2T2 ZNF148 MLLT1 RERE GTF2F1 PCAT14 ZNF70 SPECC1L IGLL1 ENSG00000232545 POM121L9P MIF MMP11 LINC01659 VPREB3
GH22J023518 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.4 -15.3 -15315 6.4 ZFX ELF3 MNT ZNF148 NKRF POLR2A MLLT1 RERE TFE3 HNF1A ENSG00000272578 LINC02557 CABIN1 SMARCB1 MMP11 RGL4 GGTLC4P GUSBP11 ENSG00000227755 DDT
GH22J023526 Enhancer 0.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -9.8 -9780 1 LINC01659 ENSG00000272578 PCAT14 LINC02557
GH22J023530 Enhancer 0.7 Ensembl dbSUPER 0.4 -7.0 -6980 1.8 ZNF24 ZIC2 ZNF189 WT1 ZFP91 GLIS1 ENSG00000227755 PCAT14 LINC02557
GH22J023543 Enhancer 0.7 Ensembl 0.4 +6.3 6320 0.4 MAFK CREB1 ZNF629 ZNF316 SCRT2 JUN NFE2 JUND FOS SCRT1 IGLL1 GC22P023592 PCAT14
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PCAT14 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PCAT14 Gene

Genomic Locations for PCAT14 Gene
chr22:23,536,881-23,547,797
(GRCh38/hg38)
Size:
10,917 bases
Orientation:
Plus strand

Genomic View for PCAT14 Gene

Genes around PCAT14 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCAT14 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCAT14 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCAT14 Gene

Proteins for PCAT14 Gene

Post-translational modifications for PCAT14 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCAT14 Gene

Domains & Families for PCAT14 Gene

Gene Families for PCAT14 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PCAT14: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PCAT14 Gene

Function for PCAT14 Gene

Phenotypes From GWAS Catalog for PCAT14 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCAT14 Gene

Localization for PCAT14 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCAT14 Gene

Pathways & Interactions for PCAT14 Gene

PathCards logo

SuperPathways for PCAT14 Gene

No Data Available

Interacting Proteins for PCAT14 Gene

Gene Ontology (GO) - Biological Process for PCAT14 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PCAT14 Gene

Drugs & Compounds for PCAT14 Gene

No Compound Related Data Available

Transcripts for PCAT14 Gene

mRNA/cDNA for PCAT14 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PCAT14 Gene

No ASD Table

Relevant External Links for PCAT14 Gene

GeneLoc Exon Structure for
PCAT14
ECgene alternative splicing isoforms for
PCAT14

Expression for PCAT14 Gene

NURSA nuclear receptor signaling pathways regulating expression of PCAT14 Gene:

PCAT14
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCAT14 Gene

Orthologs for PCAT14 Gene

Evolution for PCAT14 Gene

ENSEMBL:
Gene Tree for PCAT14 (if available)
TreeFam:
Gene Tree for PCAT14 (if available)

No data available for Orthologs for PCAT14 Gene

Paralogs for PCAT14 Gene

No data available for Paralogs for PCAT14 Gene

Variants for PCAT14 Gene

Sequence variations from dbSNP and Humsavar for PCAT14 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000036277 -- 23,543,057(+) A/C intron_variant
rs1000064146 -- 23,547,485(+) G/A downstream_transcript_variant
rs1000095061 -- 23,547,714(+) C/T downstream_transcript_variant
rs1000848026 -- 23,536,817(+) C/T upstream_transcript_variant
rs1000879160 -- 23,536,978(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for PCAT14 Gene

Variant ID Type Subtype PubMed ID
dgv4528n100 CNV gain 25217958
dgv8039n54 CNV gain 21841781
esv2678067 CNV deletion 23128226
esv2724041 CNV deletion 23290073
esv2762117 CNV gain 21179565
esv3575443 CNV gain 25503493
esv3647402 CNV gain 21293372
esv3647404 CNV loss 21293372
esv3893457 CNV gain 25118596
esv3893461 CNV gain 25118596
nsv1059951 CNV gain 25217958
nsv1062411 CNV gain 25217958
nsv1066891 CNV gain 25217958
nsv469702 CNV gain 16826518
nsv471186 CNV loss 18288195
nsv508729 CNV insertion 20534489
nsv511073 OTHER complex 20534489
nsv526567 CNV gain 19592680
nsv588601 CNV gain 21841781
nsv588604 CNV gain 21841781
nsv7350 OTHER inversion 18451855
nsv834154 CNV gain 17160897
nsv9876 CNV gain+loss 18304495

Additional Variant Information for PCAT14 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCAT14

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PCAT14 Gene

Disorders for PCAT14 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PCAT14 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for PCAT14

genes like me logo Genes that share disorders with PCAT14: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PCAT14 Gene

Publications for PCAT14 Gene

  1. Multi-institutional Analysis Shows that Low PCAT-14 Expression Associates with Poor Outcomes in Prostate Cancer. (PMID: 27460352) White NM … Maher CA (European urology 2017) 2 3 58
  2. Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression. (PMID: 21804560) Prensner JR … Chinnaiyan AM (Nature biotechnology 2011) 2 3 58
  3. Long noncoding RNA PCAT-14 induces proliferation and invasion by hepatocellular carcinoma cells by inducing methylation of miR-372. (PMID: 28415780) Wang Y … Li T (Oncotarget 2017) 3 58
  4. Identification and Validation of PCAT14 as Prognostic Biomarker in Prostate Cancer. (PMID: 27566105) Shukla S … Malik R (Neoplasia (New York, N.Y.) 2016) 3 58

Products for PCAT14 Gene

Sources for PCAT14 Gene

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