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Aliases for PAXIP1-AS2 Gene

Subcategory (RNA class) for PAXIP1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PAXIP1-AS2 Gene

  • PAXIP1 Antisense RNA 2 2 3 5
  • PAXIP1 Opposite Strand 2 3
  • PAXIP1OS 3

External Ids for PAXIP1-AS2 Gene

Previous HGNC Symbols for PAXIP1-AS2 Gene

  • PAXIP1OS

Previous GeneCards Identifiers for PAXIP1-AS2 Gene

  • GC07P154723

Summaries for PAXIP1-AS2 Gene

GeneCards Summary for PAXIP1-AS2 Gene

PAXIP1-AS2 (PAXIP1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PAXIP1-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PAXIP1-AS2 Gene

Genomics for PAXIP1-AS2 Gene

GeneHancer (GH) Regulatory Elements for PAXIP1-AS2 Gene

Promoters and enhancers for PAXIP1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I154927 Promoter/Enhancer 1.5 Ensembl ENCODE 572.1 +0.2 247 2.3 PKNOX1 ATF1 ARNT ZFP64 SIN3A FEZF1 ZNF2 BRCA1 YY1 GTF3C2 PAXIP1-AS2 ENSG00000272760
GH07I155917 Enhancer 1.2 Ensembl ENCODE 84 +990.2 990212 3.3 PKNOX1 CLOCK FOXA2 MLX YBX1 DMAP1 ZNF2 YY1 ZNF207 ZNF548 PAXIP1-AS2 RBM33 PAXIP1 ENSG00000273183 PAXIP1-AS1 RNF32 LOC389602 GC07M155822
GH07I155001 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 26.9 +75.0 75014 3.5 HDGF CLOCK MLX ARNT SIN3A ZNF2 YY1 POLR2B ZNF766 ZNF207 PAXIP1-AS1 PAXIP1 PAXIP1-AS2 RBM33 HTR5A
GH07I155203 Enhancer 1.5 Ensembl ENCODE dbSUPER 21.9 +278.3 278286 6 FEZF1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF143 MCM3 SP3 MEF2D PAXIP1-AS2 PAXIP1 RBM33 ENSG00000273183 PAXIP1-AS1 LOC105375586 INSIG1 SHH ENSG00000278998
GH07I155643 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10 +716.6 716608 3.3 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B RBM33 LOC100506302 ENSG00000283128 PAXIP1 PAXIP1-AS2 ENSG00000273183
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PAXIP1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PAXIP1-AS2 Gene

Genomic Locations for PAXIP1-AS2 Gene
chr7:154,928,498-154,949,908
(GRCh38/hg38)
Size:
21,411 bases
Orientation:
Plus strand
chr7:154,720,208-154,741,618
(GRCh37/hg19)

Genomic View for PAXIP1-AS2 Gene

Genes around PAXIP1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PAXIP1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PAXIP1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PAXIP1-AS2 Gene

Proteins for PAXIP1-AS2 Gene

Post-translational modifications for PAXIP1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PAXIP1-AS2 Gene

Domains & Families for PAXIP1-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PAXIP1-AS2 Gene

Function for PAXIP1-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PAXIP1-AS2 Gene

Localization for PAXIP1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PAXIP1-AS2 Gene

Pathways & Interactions for PAXIP1-AS2 Gene

SuperPathways for PAXIP1-AS2 Gene

No Data Available

Interacting Proteins for PAXIP1-AS2 Gene

Gene Ontology (GO) - Biological Process for PAXIP1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PAXIP1-AS2 Gene

Drugs & Compounds for PAXIP1-AS2 Gene

No Compound Related Data Available

Transcripts for PAXIP1-AS2 Gene

mRNA/cDNA for PAXIP1-AS2 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PAXIP1-AS2 Gene

No ASD Table

Relevant External Links for PAXIP1-AS2 Gene

GeneLoc Exon Structure for
PAXIP1-AS2
ECgene alternative splicing isoforms for
PAXIP1-AS2

Expression for PAXIP1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PAXIP1-AS2 Gene

genes like me logo Genes that share expression patterns with PAXIP1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PAXIP1-AS2 Gene

Orthologs for PAXIP1-AS2 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for PAXIP1-AS2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PAXIP1-AS2 34
  • 97 (a)
OneToOne
Species where no ortholog for PAXIP1-AS2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for PAXIP1-AS2 Gene

ENSEMBL:
Gene Tree for PAXIP1-AS2 (if available)
TreeFam:
Gene Tree for PAXIP1-AS2 (if available)

Paralogs for PAXIP1-AS2 Gene

No data available for Paralogs for PAXIP1-AS2 Gene

Variants for PAXIP1-AS2 Gene

Sequence variations from dbSNP and Humsavar for PAXIP1-AS2 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000211148 -- 154,949,168(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000314965 -- 154,948,801(+) A/T genic_downstream_transcript_variant, intron_variant
rs1000919049 -- 154,937,922(+) C/A intron_variant
rs1001111266 -- 154,943,875(+) A/C intron_variant
rs1001327878 -- 154,933,849(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PAXIP1-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv1033085 CNV gain 25217958
nsv483088 CNV loss 15286789

Variation tolerance for PAXIP1-AS2 Gene

Gene Damage Index Score: 0.46; 10.09% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for PAXIP1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PAXIP1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PAXIP1-AS2 Gene

Disorders for PAXIP1-AS2 Gene

Additional Disease Information for PAXIP1-AS2

No disorders were found for PAXIP1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PAXIP1-AS2 Gene

Publications for PAXIP1-AS2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for PAXIP1-AS2 Gene

Sources for PAXIP1-AS2 Gene

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