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Aliases for PAX6-AS1 Gene

Subcategory (RNA class) for PAX6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for PAX6-AS1 Gene

  • PAX6 Antisense RNA 1 2 3
  • PAX6 Upstream Antisense RNA 5
  • DKFZp686K1684 3
  • PAUPAR 5

External Ids for PAX6-AS1 Gene

Summaries for PAX6-AS1 Gene

GeneCards Summary for PAX6-AS1 Gene

PAX6-AS1 (PAX6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PAX6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PAX6-AS1 Gene

Genomics for PAX6-AS1 Gene

GeneHancer (GH) Regulatory Elements for PAX6-AS1 Gene

Promoters and enhancers for PAX6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J031809 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 650.7 +0.1 130 7.8 PKNOX1 FOXA2 SIN3A FEZF1 ZNF2 E2F8 FOS REST SMARCB1 ZNF610 ENSG00000285283 PAUPAR PAX6-AS1 PAX6 GC11P031818
GH11J031817 Promoter/Enhancer 1.2 EPDnew ENCODE dbSUPER 0.4 +5.7 5700 0.1 USF1 SUZ12 CREB1 ATF2 EZH2 GC11P031818 GC11P031819 PAX6 ENSG00000285283 PAUPAR PAX6-AS1
GH11J031813 Promoter/Enhancer 1.2 EPDnew ENCODE dbSUPER 0.4 -8.3 -8329 0.3 SP1 POLR2A SUZ12 IKZF1 NFE2 SPI1 PAX6 PAUPAR PAX6-AS1 GC11P031784
GH11J031794 Enhancer 1.1 VISTA UCNEbase dbSUPER 0.4 -16.4 -16418 2 USF1 PAX6 RCN1 DCDC1 GC11P031784 PAUPAR PAX6-AS1
GH11J031811 Enhancer 0.6 ENCODE dbSUPER 0.7 -4.8 -4752 0.8 SUZ12 EZH2 PAUPAR PAX6-AS1 PAX6 GC11P031784
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PAX6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PAX6-AS1 Gene

Genomic Locations for PAX6-AS1 Gene
chr11:31,812,307-32,002,405
(GRCh38/hg38)
Size:
190,099 bases
Orientation:
Plus strand
chr11:31,838,114-31,908,587
(GRCh37/hg19)
Size:
70,474 bases
Orientation:
Plus strand

Genomic View for PAX6-AS1 Gene

Genes around PAX6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PAX6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PAX6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PAX6-AS1 Gene

Function for PAX6-AS1 Gene

Phenotypes From GWAS Catalog for PAX6-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PAX6-AS1 Gene

Localization for PAX6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PAX6-AS1 Gene

Pathways & Interactions for PAX6-AS1 Gene

SuperPathways for PAX6-AS1 Gene

No Data Available

Interacting Proteins for PAX6-AS1 Gene

Gene Ontology (GO) - Biological Process for PAX6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PAX6-AS1 Gene

Drugs & Compounds for PAX6-AS1 Gene

No Compound Related Data Available

Transcripts for PAX6-AS1 Gene

mRNA/cDNA for PAX6-AS1 Gene

(1) Selected AceView cDNA sequences:
(18) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PAX6-AS1 Gene

No ASD Table

Relevant External Links for PAX6-AS1 Gene

GeneLoc Exon Structure for
PAX6-AS1
ECgene alternative splicing isoforms for
PAX6-AS1

Expression for PAX6-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PAX6-AS1 Gene

Orthologs for PAX6-AS1 Gene

Evolution for PAX6-AS1 Gene

ENSEMBL:
Gene Tree for PAX6-AS1 (if available)
TreeFam:
Gene Tree for PAX6-AS1 (if available)

No data available for Orthologs for PAX6-AS1 Gene

Paralogs for PAX6-AS1 Gene

No data available for Paralogs for PAX6-AS1 Gene

Variants for PAX6-AS1 Gene

Sequence variations from dbSNP and Humsavar for PAX6-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000041362 -- 31,818,024(+) C/A intron_variant
rs1000071746 -- 31,879,726(+) A/C intron_variant
rs1000079323 -- 31,824,966(+) A/C intron_variant
rs1000149151 -- 31,842,375(+) TTTTTTTT/TTTTTTTTT intron_variant
rs1000170697 -- 31,839,686(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PAX6-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2660764 CNV deletion 23128226
esv3625840 CNV gain 21293372
esv3625841 CNV loss 21293372
esv3625842 CNV gain 21293372
esv3625843 CNV gain 21293372
nsv7728 CNV deletion 18451855
nsv825815 CNV gain 20364138

Additional Variant Information for PAX6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PAX6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PAX6-AS1 Gene

Disorders for PAX6-AS1 Gene

No disorders were found for PAX6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PAX6-AS1 Gene

Publications for PAX6-AS1 Gene

  1. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PMID: 23319000) Luykx JJ … Ophoff RA (Molecular psychiatry 2014) 3 58
  2. Meta-analysis identifies common variants associated with body mass index in east Asians. (PMID: 22344219) Wen W … Shu XO (Nature genetics 2012) 3 58

Products for PAX6-AS1 Gene

Sources for PAX6-AS1 Gene

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