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Aliases for PARGP1 Gene

Aliases for PARGP1 Gene

  • Poly(ADP-Ribose) Glycohydrolase Pseudogene 1 2 3 5
  • PRO1102 3

External Ids for PARGP1 Gene

Previous GeneCards Identifiers for PARGP1 Gene

  • GC10P051627

Summaries for PARGP1 Gene

GeneCards Summary for PARGP1 Gene

PARGP1 (Poly(ADP-Ribose) Glycohydrolase Pseudogene 1) is a Pseudogene.

Additional gene information for PARGP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PARGP1 Gene

Genomics for PARGP1 Gene

GeneHancer (GH) Regulatory Elements for PARGP1 Gene

Promoters and enhancers for PARGP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J045971 Promoter/Enhancer 1.2 EPDnew Ensembl dbSUPER 600.7 -0.2 -173 4 PARGP1 TIMM23 AGAP4 AGAP7P SNORA74C-1
GH10J046522 Enhancer 1.3 Ensembl ENCODE 231.5 -552.5 -552543 4.4 ZNF473 MTA3 ZKSCAN8 MLLT1 ZNF121 GTF2F1 CSDE1 ZSCAN21 CDC5L BACH1 PARGP1 AGAP4 BMS1P1 AGAP9 WASHC2C ENSG00000229227 AGAP10P FAM21FP ZFAND4 SHLD2P1
GH10J045726 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 57.6 +245.1 245127 2.6 ZFX CC2D1A SP1 ELF3 MNT CBFA2T2 NKRF MLLT1 ZNF121 GTF2F1 WASHC2C FAM21FP ENSG00000228702 PARGP1 AGAP4 ENSG00000229227 ZFAND4 ENSG00000273363 AGAP10P DEPP1
GH10J046555 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 54.9 -583.8 -583773 2 HDGF ZNF680 ZNF560 ZIC2 KLF7 POLR2A KLF9 AEBP2 ZNF274 ZFHX2 GPRIN2 NPY4R PARGP1 BMS1P1 BMS1P2 AGAP4 AGAP9 WASHC2C ENSG00000229227 AGAP10P
GH10J045592 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 27.3 +377.5 377528 5 SP1 ZFX ELF3 ZKSCAN8 MNT SIX5 CBFA2T2 ZNF148 NKRF ZNF121 MARCH8 PARGP1 AGAP4 WASHC2C ZFAND4 ENSG00000273363 GC10P045511
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PARGP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PARGP1 Gene

Genomic Locations for PARGP1 Gene
chr10:45,854,093-45,972,428
(GRCh38/hg38)
Size:
118,336 bases
Orientation:
Minus strand
chr10:51,623,413-51,732,824
(GRCh37/hg19)
Size:
109,412 bases
Orientation:
Plus strand

Genomic View for PARGP1 Gene

Genes around PARGP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PARGP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PARGP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PARGP1 Gene

Proteins for PARGP1 Gene

Post-translational modifications for PARGP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PARGP1 Gene

Domains & Families for PARGP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PARGP1 Gene

Function for PARGP1 Gene

Phenotypes From GWAS Catalog for PARGP1 Gene

Phenotypes for PARGP1 Gene

genes like me logo Genes that share phenotypes with PARGP1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PARGP1 Gene

Localization for PARGP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PARGP1 Gene

Pathways & Interactions for PARGP1 Gene

PathCards logo

SuperPathways for PARGP1 Gene

No Data Available

Interacting Proteins for PARGP1 Gene

Gene Ontology (GO) - Biological Process for PARGP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PARGP1 Gene

Drugs & Compounds for PARGP1 Gene

No Compound Related Data Available

Transcripts for PARGP1 Gene

mRNA/cDNA for PARGP1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PARGP1 Gene

No ASD Table

Relevant External Links for PARGP1 Gene

GeneLoc Exon Structure for
PARGP1
ECgene alternative splicing isoforms for
PARGP1

Expression for PARGP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PARGP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of PARGP1 Gene:

PARGP1
genes like me logo Genes that share expression patterns with PARGP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PARGP1 Gene

Orthologs for PARGP1 Gene

Evolution for PARGP1 Gene

ENSEMBL:
Gene Tree for PARGP1 (if available)
TreeFam:
Gene Tree for PARGP1 (if available)

No data available for Orthologs for PARGP1 Gene

Paralogs for PARGP1 Gene

No data available for Paralogs for PARGP1 Gene

Variants for PARGP1 Gene

Sequence variations from dbSNP and Humsavar for PARGP1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1007266486 -- 45,876,319(-) A/G intron_variant
rs1018370144 -- 45,876,332(-) C/T intron_variant
rs1046528703 -- 45,876,268(-) A/G intron_variant
rs1046723 -- 45,861,779(-) C/A/G/T intron_variant
rs1046751 -- 45,861,587(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PARGP1 Gene

Variant ID Type Subtype PubMed ID
dgv127e214 CNV gain 21293372
dgv454n106 CNV deletion 24896259
esv27601 CNV loss 19812545
esv2853791 CNV deletion 24192839
esv3577172 CNV gain 25503493
esv3891807 CNV loss 25118596
nsv1069051 CNV deletion 25765185
nsv1118165 CNV deletion 24896259
nsv508583 CNV deletion 20534489
nsv510992 OTHER complex 20534489
nsv8631 CNV gain+loss 18304495
nsv8632 CNV loss 18304495
nsv8645 CNV loss 18304495
nsv8647 CNV loss 18304495
nsv8648 CNV loss 18304495
nsv8651 CNV gain 18304495
nsv8652 CNV loss 18304495
nsv8653 CNV loss 18304495
nsv8654 CNV gain+loss 18304495
nsv947917 CNV duplication 23825009
nsv947918 CNV duplication 23825009
nsv947919 CNV duplication 23825009
nsv947920 CNV duplication 23825009
nsv947995 CNV duplication 23825009
nsv947996 CNV duplication 23825009
nsv947997 CNV duplication 23825009
nsv950960 CNV deletion 24416366

Additional Variant Information for PARGP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PARGP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PARGP1 Gene

Disorders for PARGP1 Gene

Additional Disease Information for PARGP1

No disorders were found for PARGP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PARGP1 Gene

Publications for PARGP1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 3 58

Products for PARGP1 Gene

Sources for PARGP1 Gene

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