Aliases for PARD6G-AS1 Gene

Subcategory (RNA class) for PARD6G-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PARD6G-AS1 Gene

  • PARD6G Antisense RNA 1 2 3 5
  • PARD6G-AS1 2 5 165
  • PARD6G Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG024264.2 91
  • HSALNG0122821 164

External Ids for PARD6G-AS1 Gene

Previous GeneCards Identifiers for PARD6G-AS1 Gene

  • GC18P077906

Summaries for PARD6G-AS1 Gene

GeneCards Summary for PARD6G-AS1 Gene

PARD6G-AS1 (PARD6G Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PARD6G-AS1 include Transient Neonatal Diabetes Mellitus and Patau Syndrome.

Additional gene information for PARD6G-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PARD6G-AS1 Gene

Genomics for PARD6G-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PARD6G-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J080147 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 623.8 +0.4 432 2.6 SP1 ZNF629 RFX1 POLR2A GABPA PKNOX1 PATZ1 TCF12 TRIM22 PBX2 PARD6G-AS1 RBFADN ADNP2 TXNL4A ENSG00000267127 ENSG00000278000 PARD6G
GH18J080107 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 17.7 -38.2 -38249 3.2 BRCA1 SP1 HNRNPL CREB1 ATF7 ZNF629 TFE3 NFKBIZ ZNF692 POLR2A ADNP2 RBFADN PARD6G-AS1 HSBP1L1 PARD6G
GH18J079959 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 7.9 -184.7 -184701 6.6 TEAD4 ZNF629 TFE3 LEF1 IKZF1 ZNF692 BACH1 GABPA PRDM1 ZNF143 HSBP1L1 ENSG00000287879 RBFADN RBFA PARD6G-AS1 TXNL4A SLC66A2 lnc-HSBP1L1-1
GH18J080157 Enhancer 0.8 Ensembl ENCODE 21.2 +10.3 10277 0.5 CTCF PRDM1 REST RAD21 TRIM22 RUNX3 ZNF316 MAFF SMC3 MAFK PARD6G-AS1 RBFA ADNP2 HSBP1L1 ENSG00000267127 ENSG00000278000 PARD6G
GH18J080119 Enhancer 0.7 Ensembl ENCODE 18.1 -28.3 -28268 1.6 TEAD4 FOXA1 POLR2A EZH2 FOXA2 USF1 GATA3 RBFADN PARD6G-AS1 ENSG00000267127 ADNP2 PARD6G
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PARD6G-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PARD6G-AS1 Gene

Genomic Locations for PARD6G-AS1 Gene
chr18:80,147,669-80,179,839
(GRCh38/hg38)
Size:
32,171 bases
Orientation:
Plus strand
chr18:77,905,807-77,936,315
(GRCh37/hg19)
Size:
30,509 bases
Orientation:
Plus strand

Genomic View for PARD6G-AS1 Gene

Genes around PARD6G-AS1 on UCSC Golden Path with GeneCards custom track
PARD6G-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PARD6G-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PARD6G-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PARD6G-AS1 Gene

Proteins for PARD6G-AS1 Gene

Post-translational modifications for PARD6G-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PARD6G-AS1 Gene

Domains & Families for PARD6G-AS1 Gene

Gene Families for PARD6G-AS1 Gene

genes like me logo Genes that share domains with PARD6G-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PARD6G-AS1 Gene

Function for PARD6G-AS1 Gene

Phenotypes From GWAS Catalog for PARD6G-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PARD6G-AS1 Gene

Localization for PARD6G-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PARD6G-AS1 Gene

Pathways & Interactions for PARD6G-AS1 Gene

PathCards logo

SuperPathways for PARD6G-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PARD6G-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PARD6G-AS1 Gene

Drugs & Compounds for PARD6G-AS1 Gene

No Compound Related Data Available

Transcripts for PARD6G-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PARD6G-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007C7503_9606 lncRNA 1058 4

Ensembl: ENST00000588226 (view in UCSC) ,

LncBook: HSALNT0253907,

LNCipedia: PARD6G-AS1:8,

NONCODE: NONHSAT178131.1,

URS0000759BB3_9606 lncRNA 734 4

RefSeq: NR_028340,

LncBook: HSALNT0253902,

LNCipedia: PARD6G-AS1:3,

NONCODE: NONHSAT178129.1,

URS00007CF92D_9606 lncRNA 584 4

Ensembl: ENST00000587254 (view in UCSC) ,

LncBook: HSALNT0253901,

LNCipedia: PARD6G-AS1:4,

NONCODE: NONHSAT178127.1,

URS00007D598A_9606 lncRNA 525 4

Ensembl: ENST00000585422 (view in UCSC) ,

LncBook: HSALNT0253906,

LNCipedia: PARD6G-AS1:7,

NONCODE: NONHSAT178132.1,

URS00007E2E16_9606 lncRNA 647 3

Ensembl: ENST00000589574 (view in UCSC) ,

LncBook: HSALNT0253903,

LNCipedia: PARD6G-AS1:6,

PARD6G-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PARD6G-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PARD6G-AS1 Gene

No ASD Table

Relevant External Links for PARD6G-AS1 Gene

GeneLoc Exon Structure for
PARD6G-AS1

Expression for PARD6G-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PARD6G-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PARD6G-AS1 Gene

This gene is overexpressed in Pituitary (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PARD6G-AS1

SOURCE GeneReport for Unigene cluster for PARD6G-AS1 Gene:

Hs.352602
genes like me logo Genes that share expression patterns with PARD6G-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PARD6G-AS1 Gene

Orthologs for PARD6G-AS1 Gene

Evolution for PARD6G-AS1 Gene

ENSEMBL:
Gene Tree for PARD6G-AS1 (if available)
TreeFam:
Gene Tree for PARD6G-AS1 (if available)

No data available for Orthologs for PARD6G-AS1 Gene

Paralogs for PARD6G-AS1 Gene

No data available for Paralogs for PARD6G-AS1 Gene

Variants for PARD6G-AS1 Gene

Additional dbSNP identifiers (rs#s) for PARD6G-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PARD6G-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3413n100 CNV gain 25217958
dgv3414n100 CNV gain 25217958
dgv3415n100 CNV gain 25217958
esv25081 CNV loss 19812545
esv2661105 CNV deletion 23128226
esv2674259 CNV deletion 23128226
esv2676946 CNV deletion 23128226
esv3583199 CNV loss 25503493
esv3643326 CNV loss 21293372
esv3643330 CNV loss 21293372
esv3643331 CNV gain 21293372
esv3643332 CNV loss 21293372
esv3643333 CNV gain 21293372
esv3643334 CNV loss 21293372
esv3643335 CNV loss 21293372
esv3643336 CNV loss 21293372
esv3643337 CNV loss 21293372
nsv1062516 CNV gain 25217958
nsv1065902 CNV gain 25217958
nsv1160552 CNV duplication 26073780
nsv428359 CNV gain 18775914
nsv458317 CNV gain 19166990
nsv577970 CNV gain 21841781
nsv953932 CNV deletion 24416366

Additional Variant Information for PARD6G-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PARD6G-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PARD6G-AS1 Gene

Disorders for PARD6G-AS1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for PARD6G-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
transient neonatal diabetes mellitus
  • tndm1
patau syndrome
  • d1 trisomy
beckwith-wiedemann syndrome
  • bws
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with PARD6G-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PARD6G-AS1 Gene

Publications for PARD6G-AS1 Gene

  1. Maternal 5mCpG Imprints at the PARD6G-AS1 and GCSAML Differentially Methylated Regions Are Decoupled From Parent-of-Origin Expression Effects in Multiple Human Tissues. (PMID: 29545821) de Sá Machado Araújo G … Medina-Acosta E (Frontiers in genetics 2018) 3
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for PARD6G-AS1 Gene

Sources for PARD6G-AS1 Gene