Aliases for PARD3-AS1 Gene

Subcategory (RNA class) for PARD3-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for PARD3-AS1 Gene

  • PARD3 Antisense RNA 1 2 3 5
  • PARD3-AS1 2 168
  • NONHSAG005603 92
  • HSALNG0077249 167

External Ids for PARD3-AS1 Gene

Previous GeneCards Identifiers for PARD3-AS1 Gene

  • GC10P035106

Summaries for PARD3-AS1 Gene

GeneCards Summary for PARD3-AS1 Gene

PARD3-AS1 (PARD3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PARD3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PARD3-AS1 Gene

Genomics for PARD3-AS1 Gene

GeneHancer (GH) Regulatory Elements for PARD3-AS1 Gene

Promoters and enhancers for PARD3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J034813 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 515.4 -0.8 -791 4.2 HNRNPK SIN3A POLR2G ZFX ZIC2 ZBTB26 SAP30 TGIF2 ZBTB7A MYC PARD3-AS1 PARD3 piR-49782-001
GH10J035191 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 14.3 +378.7 378666 6.1 ZBTB40 EP300 CTCF ZSCAN5C TCF12 SP1 RBAK GTF2E2 ZNF639 ZNF354C CREM ENSG00000271335 CUL2 PARD3-AS1 RNU7-77P ENSG00000230534 RF00017-652 ENSG00000269952
GH10J034769 Enhancer 1 FANTOM5 ENCODE dbSUPER 23.5 -44.5 -44476 2.6 NCOR1 ZNF316 NFIC TRIM24 TRIM28 TAL1 FOS TCF12 GATA2 DPF2 PARD3-AS1 PARD3 piR-49782-001
GH10J034709 Enhancer 1.3 Ensembl ENCODE dbSUPER 16.8 -102.0 -101991 9.8 TCF12 JUND FOS ZNF639 FOXA1 HES1 TGIF2 RUNX1 SKI JUN PARD3 PARD3-AS1 HSALNG0077247 piR-39858-054
GH10J034739 Enhancer 1.2 ENCODE CraniofacialAtlas dbSUPER 16.5 -75.7 -75710 1.7 USF1 ZIC2 ZNF423 FOXA1 TRIM28 POLR2A OSR2 HDAC2 KDM5B RXRA PARD3 PARD3-AS1 HSALNG0077247 piR-49782-001
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PARD3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PARD3-AS1 Gene

Genomic Locations for PARD3-AS1 Gene
chr10:34,815,692-34,816,487
(GRCh38/hg38)
Size:
796 bases
Orientation:
Plus strand
chr10:35,104,695-35,105,350
(GRCh37/hg19)
Size:
656 bases
Orientation:
Plus strand

Genomic View for PARD3-AS1 Gene

Genes around PARD3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PARD3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PARD3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PARD3-AS1 Gene

Proteins for PARD3-AS1 Gene

Post-translational modifications for PARD3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PARD3-AS1 Gene

Domains & Families for PARD3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PARD3-AS1 Gene

Function for PARD3-AS1 Gene

Phenotypes From GWAS Catalog for PARD3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PARD3-AS1 Gene

Localization for PARD3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PARD3-AS1 Gene

Pathways & Interactions for PARD3-AS1 Gene

PathCards logo

SuperPathways for PARD3-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PARD3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PARD3-AS1 Gene

Drugs & Compounds for PARD3-AS1 Gene

No Compound Related Data Available

Transcripts for PARD3-AS1 Gene

mRNA/cDNA for PARD3-AS1 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
5 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PARD3-AS1 Gene

No ASD Table

Relevant External Links for PARD3-AS1 Gene

GeneLoc Exon Structure for
PARD3-AS1

Expression for PARD3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PARD3-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PARD3-AS1

SOURCE GeneReport for Unigene cluster for PARD3-AS1 Gene:

Hs.549790
genes like me logo Genes that share expression patterns with PARD3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PARD3-AS1 Gene

Orthologs for PARD3-AS1 Gene

Evolution for PARD3-AS1 Gene

ENSEMBL:
Gene Tree for PARD3-AS1 (if available)
TreeFam:
Gene Tree for PARD3-AS1 (if available)

No data available for Orthologs for PARD3-AS1 Gene

Paralogs for PARD3-AS1 Gene

No data available for Paralogs for PARD3-AS1 Gene

Variants for PARD3-AS1 Gene

Additional dbSNP identifiers (rs#s) for PARD3-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PARD3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1032n54 CNV gain 21841781
dgv395n106 CNV deletion 24896259
dgv702n100 CNV gain 25217958
dgv703n100 CNV gain 25217958
dgv704n100 CNV gain 25217958
dgv76n27 CNV gain 19166990
esv3576338 CNV gain 25503493
esv3622879 CNV gain 21293372
nsv1069470 CNV deletion 25765185
nsv24473 CNV deletion 16902084
nsv466860 CNV gain 19166990
nsv466862 CNV gain 19166990
nsv470931 CNV gain 18288195
nsv521667 CNV gain 19592680
nsv525060 CNV gain 19592680
nsv550391 CNV gain 21841781
nsv550392 CNV gain 21841781
nsv550397 CNV gain 21841781
nsv951538 CNV deletion 24416366

Additional Variant Information for PARD3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PARD3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PARD3-AS1 Gene

Disorders for PARD3-AS1 Gene

Additional Disease Information for PARD3-AS1

No disorders were found for PARD3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PARD3-AS1 Gene

Publications for PARD3-AS1 Gene

No publications were found for PARD3-AS1 Gene.

Products for PARD3-AS1 Gene

Sources for PARD3-AS1 Gene