Aliases for PARD3-AS1 Gene

Subcategory (RNA class) for PARD3-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for PARD3-AS1 Gene

  • PARD3 Antisense RNA 1 2 3 5
  • PARD3-AS1 2 170
  • HSALNG0077249 169
  • NONHSAG005603 94

External Ids for PARD3-AS1 Gene

Previous GeneCards Identifiers for PARD3-AS1 Gene

  • GC10P035106

Summaries for PARD3-AS1 Gene

GeneCards Summary for PARD3-AS1 Gene

PARD3-AS1 (PARD3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PARD3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PARD3-AS1 Gene

Genomics for PARD3-AS1 Gene

GeneHancer (GH) Regulatory Elements for PARD3-AS1 Gene

Promoters and enhancers for PARD3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J034813 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 765.4 -0.8 -791 4.2 MLX MYC ZNF148 NKRF ELF3 ZFX SP7 POLR2A PRDM1 SP5 PARD3-AS1 PARD3 piR-49782-001
GH10J034769 Enhancer 1 FANTOM5 ENCODE dbSUPER 23.5 -44.5 -44476 2.6 MNT TEAD4 CBFA2T2 SMARCA4 TRIM24 IKZF1 DPF2 ZNF316 EP300 TCF12 PARD3-AS1 PARD3 piR-49782-001
GH10J034709 Enhancer 1.3 Ensembl ENCODE dbSUPER 16.8 -102.0 -101991 9.8 SIN3A SMARCE1 NR2F6 CREB1 MIXL1 MYC HLF MAX TEAD4 ELF3 PARD3 PARD3-AS1 HSALNG0077247 piR-39858-054
GH10J034739 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 16.5 -75.7 -75710 1.7 ZNF362 SP1 SP7 ZSCAN21 PRDM1 IKZF1 GLIS2 ZIC2 ZBTB8A PRDM10 PARD3 PARD3-AS1 HSALNG0077247 piR-49782-001
GH10J034718 Enhancer 1 Ensembl ENCODE dbSUPER 17 -93.4 -93416 6.6 CTCF RAD21 MLLT1 IKZF1 REST TRIM22 CTBP1 ZSCAN4 ZSCAN29 SMARCA5 PARD3 PARD3-AS1 HSALNG0077247 piR-39858-054
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PARD3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PARD3-AS1 Gene

Genomic Locations for PARD3-AS1 Gene
chr10:34,815,692-34,816,487
(GRCh38/hg38)
Size:
796 bases
Orientation:
Plus strand
chr10:35,104,695-35,105,350
(GRCh37/hg19)
Size:
656 bases
Orientation:
Plus strand

Genomic View for PARD3-AS1 Gene

Genes around PARD3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PARD3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PARD3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PARD3-AS1 Gene

Proteins for PARD3-AS1 Gene

Post-translational modifications for PARD3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PARD3-AS1 Gene

Domains & Families for PARD3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PARD3-AS1 Gene

Function for PARD3-AS1 Gene

Phenotypes From GWAS Catalog for PARD3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PARD3-AS1 Gene

Localization for PARD3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PARD3-AS1 Gene

Pathways & Interactions for PARD3-AS1 Gene

PathCards logo

SuperPathways for PARD3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PARD3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PARD3-AS1 Gene

Drugs & Compounds for PARD3-AS1 Gene

No Compound Related Data Available

Transcripts for PARD3-AS1 Gene

mRNA/cDNA for PARD3-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(4) LNCipedia transcripts :
(5) LncBook transcripts :
(4) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PARD3-AS1 Gene

No ASD Table

Relevant External Links for PARD3-AS1 Gene

GeneLoc Exon Structure for
PARD3-AS1
ECgene alternative splicing isoforms for
PARD3-AS1

Expression for PARD3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PARD3-AS1 Gene

SOURCE GeneReport for Unigene cluster for PARD3-AS1 Gene:

Hs.549790
genes like me logo Genes that share expression patterns with PARD3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PARD3-AS1 Gene

Orthologs for PARD3-AS1 Gene

Evolution for PARD3-AS1 Gene

ENSEMBL:
Gene Tree for PARD3-AS1 (if available)
TreeFam:
Gene Tree for PARD3-AS1 (if available)

No data available for Orthologs for PARD3-AS1 Gene

Paralogs for PARD3-AS1 Gene

No data available for Paralogs for PARD3-AS1 Gene

Variants for PARD3-AS1 Gene

Sequence variations from dbSNP and Humsavar for PARD3-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000514797 -- 34,815,397(+) C/T upstream_transcript_variant
rs1000873816 -- 34,816,116(+) G/T intron_variant
rs1001156724 -- 34,815,115(+) G/A upstream_transcript_variant
rs1003246597 -- 34,813,848(+) A/G upstream_transcript_variant
rs1003603937 -- 34,814,062(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for PARD3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1032n54 CNV gain 21841781
dgv395n106 CNV deletion 24896259
dgv702n100 CNV gain 25217958
dgv703n100 CNV gain 25217958
dgv704n100 CNV gain 25217958
dgv76n27 CNV gain 19166990
esv3576338 CNV gain 25503493
esv3622879 CNV gain 21293372
nsv1069470 CNV deletion 25765185
nsv24473 CNV deletion 16902084
nsv466860 CNV gain 19166990
nsv466862 CNV gain 19166990
nsv470931 CNV gain 18288195
nsv521667 CNV gain 19592680
nsv525060 CNV gain 19592680
nsv550391 CNV gain 21841781
nsv550392 CNV gain 21841781
nsv550397 CNV gain 21841781
nsv951538 CNV deletion 24416366

Additional Variant Information for PARD3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PARD3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PARD3-AS1 Gene

Disorders for PARD3-AS1 Gene

Additional Disease Information for PARD3-AS1

No disorders were found for PARD3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PARD3-AS1 Gene

Publications for PARD3-AS1 Gene

No publications were found for PARD3-AS1 Gene.

Products for PARD3-AS1 Gene

Sources for PARD3-AS1 Gene