Aliases for PANTR1 Gene

Data sources for PANTR1 Gene:

RNA type for PANTR1 Gene

lncRNA

Aliases for PANTR1 Gene

External Ids for PANTR1 Gene

Previous HGNC Symbols for PANTR1 Gene

  • LINC01158

Previous GeneCards Identifiers for PANTR1 Gene

  • GC02M104656

Summaries for PANTR1 Gene

GeneCards Summary for PANTR1 Gene

PANTR1 (POU3F3 Adjacent Non-Coding Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PANTR1 include Squamous Cell Carcinoma and Glioma.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PANTR1 Gene

Genomics for PANTR1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PANTR1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J104841 Promoter/Enhancer 2.7 VISTA UCNEbase FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 256.2 -1.0 -957 25.3 ZNF654 ZNF600 ZNF223 ZNF10 POLR2A ZIC2 ZBTB10 ETS1 TRIM22 FEZF1 POU3F3 PANTR1 ENSG00000269707 GPR45 ENSG00000207249 MRPS9 LINC01114 lnc-POU3F3-4 LINC01159
GH02J104835 Enhancer 0.3 Ensembl dbSUPER 6.2 +19.6 19614 0.4 ENSG00000207249 MRPS9 POU3F3 PANTR1 piR-57133-347 ENSG00000269707
GH02J104836 Enhancer 0.5 VISTA Ensembl dbSUPER 0.4 +17.0 16959 1.7 ENSG00000207249 MRPS9 POU3F3 PANTR1 piR-57133-347 ENSG00000269707
GH02J104834 Enhancer 0.4 Ensembl dbSUPER 0.4 +18.8 18814 0.8 USF1 ENSG00000207249 PANTR1 POU3F3 piR-57133-347 ENSG00000269707
GH02J104838 Enhancer 0.3 dbSUPER 0.4 +14.6 14559 1.5 ZNF366 PKNOX1 ENSG00000207249 MRPS9 ENSG00000269707 PANTR1 POU3F3 piR-57133-347
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PANTR1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PANTR1 Gene

Latest Assembly
chr2:104,794,848-104,853,815
(GRCh38/hg38)
Size:
58,968 bases
Orientation:
Minus strand

Previous Assembly
chr2:105,421,883-105,469,641
(GRCh37/hg19 by Entrez Gene)
Size:
47,759 bases
Orientation:
Minus strand

chr2:105,424,030-105,469,641
(GRCh37/hg19 by Ensembl)
Size:
45,612 bases
Orientation:
Minus strand

Genomic View for PANTR1 Gene

Genes around PANTR1 on UCSC Golden Path with GeneCards custom track
PANTR1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PANTR1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PANTR1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PANTR1 Gene

Proteins for PANTR1 Gene

Post-translational modifications for PANTR1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PANTR1 Gene

Domains & Families for PANTR1 Gene

Gene Families for PANTR1 Gene

genes like me logo Genes that share domains with PANTR1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PANTR1 Gene

Function for PANTR1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PANTR1 Gene

Localization for PANTR1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PANTR1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PANTR1 Gene

Pathways & Interactions for PANTR1 Gene

PathCards logo

SuperPathways for PANTR1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PANTR1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PANTR1 Gene

Drugs & Compounds for PANTR1 Gene

No Compound Related Data Available

Transcripts for PANTR1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PANTR1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00000E3CF2_9606 lncRNA 747 4

Ensembl: ENST00000458253 (view in UCSC) ,

LncBook: HSALNT0037009,

LNCipedia: PANTR1:46,

NONCODE: NONHSAT072951.2,

URS000075A634_9606 lncRNA 2874 3

RefSeq: NR_037883,

LNCipedia: PANTR1:44,

NONCODE: NONHSAT072947.2,

URS000023278F_9606 lncRNA 641 3

Ensembl: ENST00000413121 (view in UCSC) ,

LNCipedia: PANTR1:45,

NONCODE: NONHSAT072948.2,

URS00004B0137_9606 lncRNA 722 2

Ensembl: ENST00000454729 (view in UCSC) ,

LNCipedia: PANTR1:43,

URS00008120E5_9606 lncRNA 703 2

RefSeq: NR_131235,

LNCipedia: PANTR1:17,

PANTR1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PANTR1 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PANTR1 Gene

No ASD Table

Relevant External Links for PANTR1 Gene

GeneLoc Exon Structure for
PANTR1

Expression for PANTR1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PANTR1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PANTR1 Gene

Orthologs for PANTR1 Gene

Evolution for PANTR1 Gene

ENSEMBL:
Gene Tree for PANTR1 (if available)
TreeFam:
Gene Tree for PANTR1 (if available)
Alliance of Genome Resources:
Additional Orthologs for PANTR1

No data available for Orthologs for PANTR1 Gene

Paralogs for PANTR1 Gene

No data available for Paralogs for PANTR1 Gene

Variants for PANTR1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PANTR1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for PANTR1 Gene

Variant ID Type Subtype PubMed ID
dgv658n67 CNV gain 20364138
esv2660782 CNV deletion 23128226
esv3328832 CNV duplication 20981092
esv3399290 CNV duplication 20981092
esv3591820 CNV loss 21293372
nsv1116777 CNV deletion 24896259
nsv1123364 CNV deletion 24896259
nsv2861 CNV insertion 18451855
nsv474413 CNV novel sequence insertion 20440878
nsv508853 CNV insertion 20534489
nsv521342 CNV loss 19592680
nsv525049 CNV loss 19592680
nsv829586 CNV gain 20364138
nsv829587 CNV loss 20364138
nsv829589 CNV gain 20364138

Additional Variant Information for PANTR1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PANTR1
Leiden Open Variation Database (LOVD)
PANTR1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PANTR1 Gene

Disorders for PANTR1 Gene

MalaCards: The human disease database

(4) MalaCards diseases for PANTR1 Gene - From: LNC and GCD

Disorder Aliases PubMed IDs
squamous cell carcinoma
  • epidermoid carcinoma
glioma
high grade glioma
  • glial cell tumor
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for PANTR1

genes like me logo Genes that share disorders with PANTR1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PANTR1 Gene

Publications for PANTR1 Gene

  1. Glioma cells promote angiogenesis through the release of exosomes containing long non-coding RNA POU3F3. (PMID: 28338200) Lang HL … Xu GH (European review for medical and pharmacological sciences 2017) 3 72
  2. Understanding the Role of lncRNAs in Nervous System Development. (PMID: 28815543) Clark BS … Blackshaw S (Advances in experimental medicine and biology 2017) 2 3
  3. Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma. (PMID: 25608466) Tong YS … Cao XF (Molecular cancer 2015) 3 72
  4. Functional linc-POU3F3 is overexpressed and contributes to tumorigenesis in glioma. (PMID: 25445282) Guo H … Zhu X (Gene 2015) 3 72
  5. Increased levels of the long intergenic non-protein coding RNA POU3F3 promote DNA methylation in esophageal squamous cell carcinoma cells. (PMID: 24631494) Li W … Zhou Y (Gastroenterology 2014) 3 72

Products for PANTR1 Gene

Sources for PANTR1 Gene