Aliases for PANTR1 Gene

Subcategory (RNA class) for PANTR1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for PANTR1 Gene

  • POU3F3 Adjacent Non-Coding Transcript 1 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1158 2 3
  • PANTR1 2 168
  • HSALNG0017541 167
  • NONHSAG028806 92
  • Linc-POU3F3 3
  • Linc-Brn1a 3
  • LINC01158 3

External Ids for PANTR1 Gene

Previous HGNC Symbols for PANTR1 Gene

  • LINC01158

Previous GeneCards Identifiers for PANTR1 Gene

  • GC02M104806

Summaries for PANTR1 Gene

GeneCards Summary for PANTR1 Gene

PANTR1 (POU3F3 Adjacent Non-Coding Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PANTR1 include Malignant Glioma and Squamous Cell Carcinoma.

Additional gene information for PANTR1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PANTR1 Gene

Genomics for PANTR1 Gene

GeneHancer (GH) Regulatory Elements for PANTR1 Gene

Promoters and enhancers for PANTR1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J104848 Promoter/Enhancer 2.3 VISTA FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +1.3 1250 8.1 EP300 CTCF ZNF10 ZIC2 ZBTB10 ZBTB26 SAP30 RFX1 KLF7 RAD21 POU3F3 ENSG00000269707 PANTR1 GPR45 piR-57133-347
GH02J104845 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 5.9 +8.6 8592 0.6 EP300 ZNF10 ZBTB10 GABPA ZBTB26 ZNF341 POLR2A EZH2 KLF9 ZNF316 POU3F3 MRPS9 PANTR1 GPR45 ENSG00000269707 piR-57133-347
GH02J104841 Promoter/Enhancer 1 CraniofacialAtlas dbSUPER 0.4 +11.3 11272 0.8 USF1 CTCF ZBTB26 HDAC2 SMC3 MXI1 PHF8 ZNF335 ZNF398 RAD21 ENSG00000207249 ENSG00000269707 PANTR1 piR-57133-347
GH02J104844 Enhancer 0.9 FANTOM5 dbSUPER 0.4 +9.1 9134 0.4 ZBTB26 ZNF341 EZH2 SMC3 ZBTB17 MXI1 ZFHX2 ZNF335 ZNF398 RNF2 POU3F3 GPR45 ENSG00000269707 PANTR1 piR-57133-347
GH02J104842 Enhancer 0.9 FANTOM5 dbSUPER 0.4 +10.6 10642 0.4 MYC CTCF ZBTB26 HDAC2 EZH2 SMC3 MXI1 PHF8 ZBTB48 ZNF335 POU3F3 GPR45 ENSG00000269707 PANTR1 piR-57133-347
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PANTR1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PANTR1 Gene

Genomic Locations for PANTR1 Gene
chr2:104,656,135-104,853,815
(GRCh38/hg38)
Size:
197,681 bases
Orientation:
Minus strand
chr2:105,421,883-105,469,641
(GRCh37/hg19)
Size:
47,759 bases
Orientation:
Minus strand

Genomic View for PANTR1 Gene

Genes around PANTR1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PANTR1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PANTR1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PANTR1 Gene

Proteins for PANTR1 Gene

Post-translational modifications for PANTR1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PANTR1 Gene

Domains & Families for PANTR1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PANTR1 Gene

Function for PANTR1 Gene

Phenotypes From GWAS Catalog for PANTR1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PANTR1 Gene

Localization for PANTR1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PANTR1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PANTR1 Gene

Pathways & Interactions for PANTR1 Gene

PathCards logo

SuperPathways for PANTR1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PANTR1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PANTR1 Gene

Drugs & Compounds for PANTR1 Gene

No Compound Related Data Available

Transcripts for PANTR1 Gene

mRNA/cDNA for PANTR1 Gene

35 RNACentral transcripts :
4 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :
11 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
12 NONCODE transcripts :
11 LncBook transcripts :
29 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PANTR1 Gene

No ASD Table

Relevant External Links for PANTR1 Gene

GeneLoc Exon Structure for
PANTR1

Expression for PANTR1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PANTR1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PANTR1 Gene

Orthologs for PANTR1 Gene

Evolution for PANTR1 Gene

ENSEMBL:
Gene Tree for PANTR1 (if available)
TreeFam:
Gene Tree for PANTR1 (if available)

No data available for Orthologs for PANTR1 Gene

Paralogs for PANTR1 Gene

No data available for Paralogs for PANTR1 Gene

Variants for PANTR1 Gene

Additional dbSNP identifiers (rs#s) for PANTR1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PANTR1 Gene

Variant ID Type Subtype PubMed ID
dgv658n67 CNV gain 20364138
esv2660782 CNV deletion 23128226
esv3328832 CNV duplication 20981092
esv3399290 CNV duplication 20981092
esv3591820 CNV loss 21293372
nsv1116777 CNV deletion 24896259
nsv1123364 CNV deletion 24896259
nsv2861 CNV insertion 18451855
nsv474413 CNV novel sequence insertion 20440878
nsv508853 CNV insertion 20534489
nsv521342 CNV loss 19592680
nsv525049 CNV loss 19592680
nsv829586 CNV gain 20364138
nsv829587 CNV loss 20364138
nsv829589 CNV gain 20364138

Additional Variant Information for PANTR1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PANTR1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PANTR1 Gene

Disorders for PANTR1 Gene

MalaCards: The human disease database

(5) MalaCards diseases for PANTR1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
malignant glioma
  • glial cell tumor
squamous cell carcinoma
  • epidermoid carcinoma
astrocytoma
  • astrocytic tumor
glioma
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for PANTR1

genes like me logo Genes that share disorders with PANTR1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PANTR1 Gene

Publications for PANTR1 Gene

  1. Understanding the Role of lncRNAs in Nervous System Development. (PMID: 28815543) Clark BS … Blackshaw S (Advances in experimental medicine and biology 2017) 2 3 54
  2. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. (PMID: 24381249) Sauvageau M … Rinn JL (eLife 2013) 2 3 54
  3. LncRNA POU3F3 promotes cancer cell migration and invasion in nasopharyngeal carcinoma by up-regulating TGF-β1. (PMID: 30602452) Li W … She W (Bioscience reports 2019) 3 54
  4. Linc-POU3F3 is overexpressed in hepatocellular carcinoma and regulates cell proliferation, migration and invasion. (PMID: 29906746) Li Y … Meng Q (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2018) 3 54
  5. Glioma cells promote angiogenesis through the release of exosomes containing long non-coding RNA POU3F3. (PMID: 28338200) Lang HL … Xu GH (European review for medical and pharmacological sciences 2017) 3 54

Products for PANTR1 Gene

Sources for PANTR1 Gene