Aliases for PAN3-AS1 Gene

Subcategory (RNA class) for PAN3-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for PAN3-AS1 Gene

  • PAN3 Antisense RNA 1 2 3 5
  • PAN3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • PAN3-AS1 2 168
  • NONHSAG013098 92

External Ids for PAN3-AS1 Gene

Previous GeneCards Identifiers for PAN3-AS1 Gene

  • GC13M028711

Summaries for PAN3-AS1 Gene

GeneCards Summary for PAN3-AS1 Gene

PAN3-AS1 (PAN3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PAN3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PAN3-AS1 Gene

Genomics for PAN3-AS1 Gene

GeneHancer (GH) Regulatory Elements for PAN3-AS1 Gene

Promoters and enhancers for PAN3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J028136 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 509.1 -0.6 -596 6.3 HNRNPK ZBTB40 ZNF217 ZSCAN5C NRF1 POLR2G USF1 SP1 GTF2E2 PHF8 PAN3-AS1 RNU6-82P PAN3 piR-32214-133
GH13J028530 Promoter/Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas 29.1 -393.1 -393092 3 NRF1 PHB2 ZBTB5 ZBTB11 GABPA ZBTB26 TARDBP SAP30 REST TOE1 PAN3-AS1 PAN3 FLT1 POMP POLR1D EEF1A1P3 piR-57461-061 piR-31937-052
GH13J027250 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.7 +887.1 887073 4.6 RXRA ZBTB40 ZNF217 EP300 SIN3A NRF1 TCF12 MYC POLR2G GTF2E2 RPL21 LINC02340 LINC00412 NONHSAG013078.2 SNORA27 USP12 PAN3 WASF3 RASL11A PAN3-AS1
GH13J027821 Enhancer 1.2 VISTA UCNEbase ENCODE 9.7 +316.9 316853 2.2 USF1 EZH2 HDAC2 RNF2 CHD1 SUZ12 CHD7 HDAC6 NANOG MTA2 GSX1 CDX2 RNU6-63P PAN3-AS1 RNU6-73P RF00026-281 piR-35674-123 PLUT
GH13J028099 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 5.4 +38.8 38773 2 USF1 ZFX ZIC2 ZBTB26 EZH2 POLR2A HDAC2 SIN3A MYC WT1 FLT3 HSALNG0095991 PAN3-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PAN3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PAN3-AS1 Gene

Genomic Locations for PAN3-AS1 Gene
chr13:28,132,305-28,139,174
(GRCh38/hg38)
Size:
6,870 bases
Orientation:
Minus strand
chr13:28,710,980-28,713,311
(GRCh37/hg19)
Size:
2,332 bases
Orientation:
Minus strand

Genomic View for PAN3-AS1 Gene

Genes around PAN3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PAN3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PAN3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PAN3-AS1 Gene

Proteins for PAN3-AS1 Gene

Post-translational modifications for PAN3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PAN3-AS1 Gene

Domains & Families for PAN3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PAN3-AS1 Gene

Function for PAN3-AS1 Gene

Phenotypes From GWAS Catalog for PAN3-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PAN3-AS1 Gene

Localization for PAN3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PAN3-AS1 Gene

Pathways & Interactions for PAN3-AS1 Gene

PathCards logo

SuperPathways for PAN3-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PAN3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PAN3-AS1 Gene

Drugs & Compounds for PAN3-AS1 Gene

No Compound Related Data Available

Transcripts for PAN3-AS1 Gene

mRNA/cDNA for PAN3-AS1 Gene

8 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
7 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PAN3-AS1 Gene

No ASD Table

Relevant External Links for PAN3-AS1 Gene

GeneLoc Exon Structure for
PAN3-AS1

Expression for PAN3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PAN3-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PAN3-AS1

SOURCE GeneReport for Unigene cluster for PAN3-AS1 Gene:

Hs.123191
genes like me logo Genes that share expression patterns with PAN3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PAN3-AS1 Gene

Orthologs for PAN3-AS1 Gene

Evolution for PAN3-AS1 Gene

ENSEMBL:
Gene Tree for PAN3-AS1 (if available)
TreeFam:
Gene Tree for PAN3-AS1 (if available)

No data available for Orthologs for PAN3-AS1 Gene

Paralogs for PAN3-AS1 Gene

No data available for Paralogs for PAN3-AS1 Gene

Variants for PAN3-AS1 Gene

Additional dbSNP identifiers (rs#s) for PAN3-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PAN3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv34052 CNV loss 18971310

Additional Variant Information for PAN3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PAN3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PAN3-AS1 Gene

Disorders for PAN3-AS1 Gene

Additional Disease Information for PAN3-AS1

No disorders were found for PAN3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PAN3-AS1 Gene

Publications for PAN3-AS1 Gene

  1. Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. (PMID: 25086665) Wolpin BM … Amundadottir LT (Nature genetics 2014) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for PAN3-AS1 Gene

Sources for PAN3-AS1 Gene