Aliases for PAK6-AS1 Gene

RNA type for PAK6-AS1 Gene

lncRNA

Aliases for PAK6-AS1 Gene

External Ids for PAK6-AS1 Gene

Previous HGNC Symbols for PAK6-AS1 Gene

  • C15orf56

Summaries for PAK6-AS1 Gene

GeneCards Summary for PAK6-AS1 Gene

PAK6-AS1 (PAK6 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PAK6-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PAK6-AS1 Gene

Genomics for PAK6-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PAK6-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PAK6-AS1 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for PAK6-AS1

Genomic Locations for PAK6-AS1 Gene

Latest Assembly
chr15:40,250,663-40,252,969
(GRCh38/hg38)
Size:
2,307 bases
Orientation:
Minus strand

Previous Assembly
chr15:40,542,865-40,545,160
(GRCh37/hg19 by Entrez Gene)
Size:
2,296 bases
Orientation:
Minus strand

chr15:40,542,865-40,545,170
(GRCh37/hg19 by Ensembl)
Size:
2,306 bases
Orientation:
Minus strand

Genomic View for PAK6-AS1 Gene

Genes around PAK6-AS1 on UCSC Golden Path with GeneCards custom track
PAK6-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PAK6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PAK6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PAK6-AS1 Gene

Proteins for PAK6-AS1 Gene

  • Protein details for PAK6-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N910-CO056_HUMAN
    Recommended name:
    Putative uncharacterized protein C15orf56
    Protein Accession:
    Q8N910

    Protein attributes for PAK6-AS1 Gene

    Size:
    161 amino acids
    Molecular mass:
    17040 Da
    Quaternary structure:
    No Data Available

neXtProt entry for PAK6-AS1 Gene

Post-translational modifications for PAK6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PAK6-AS1 Gene

Domains & Families for PAK6-AS1 Gene

Gene Families for PAK6-AS1 Gene

genes like me logo Genes that share domains with PAK6-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PAK6-AS1 Gene

Function for PAK6-AS1 Gene

Phenotypes From GWAS Catalog for PAK6-AS1 Gene

genes like me logo Genes that share phenotypes with PAK6-AS1: view

CRISPR products for research

miRNA for PAK6-AS1 Gene

miRTarBase miRNAs that target PAK6-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PAK6-AS1 Gene

Localization for PAK6-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PAK6-AS1 gene
Compartment Confidence
extracellular 1
mitochondrion 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PAK6-AS1 Gene

Pathways & Interactions for PAK6-AS1 Gene

PathCards logo

SuperPathways for PAK6-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PAK6-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PAK6-AS1 Gene

Drugs & Compounds for PAK6-AS1 Gene

No Compound Related Data Available

Transcripts for PAK6-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PAK6-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00007E0619_9606 lncRNA 2131 2

Ensembl: ENST00000623360 (view in UCSC) ,

LNCipedia: lnc-PLCB2-2:2,

URS0001BBE386_9606 lncRNA 2177 1

RefSeq: NR_168270,

URS00007DEC91_9606 lncRNA 1195 1

LNCipedia: lnc-PLCB2-2:1,

PAK6-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PAK6-AS1 Gene

1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for PAK6-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for PAK6-AS1 Gene

No ASD Table

Relevant External Links for PAK6-AS1 Gene

GeneLoc Exon Structure for
PAK6-AS1

Expression for PAK6-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PAK6-AS1

SOURCE GeneReport for Unigene cluster for PAK6-AS1 Gene:

Hs.631718
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PAK6-AS1 Gene

Orthologs for PAK6-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for PAK6-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C15H15orf56 29
  • 99.17 (n)
C15orf56 30
  • 98 (a)
OneToOne
Species where no ortholog for PAK6-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for PAK6-AS1 Gene

ENSEMBL:
Gene Tree for PAK6-AS1 (if available)
TreeFam:
Gene Tree for PAK6-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for PAK6-AS1

Paralogs for PAK6-AS1 Gene

No data available for Paralogs for PAK6-AS1 Gene

Variants for PAK6-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PAK6-AS1 Gene

SNP ID Clinical significance and condition Chr 15 pos Variation AA Info Type
rs55799438 -- p.Ile160Thr
rs55863440 -- p.Pro119Ser
rs55974545 -- p.Pro151Arg

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PAK6-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for PAK6-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv471240 CNV loss 18288195
nsv952611 CNV deletion 24416366

Variation tolerance for PAK6-AS1 Gene

Gene Damage Index Score: 5.98; 74.74% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for PAK6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PAK6-AS1
Leiden Open Variation Database (LOVD)
PAK6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PAK6-AS1 Gene

Disorders for PAK6-AS1 Gene

Additional Disease Information for PAK6-AS1

No disorders were found for PAK6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PAK6-AS1 Gene

Publications for PAK6-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for PAK6-AS1 Gene

Products for PAK6-AS1 Gene

Sources for PAK6-AS1 Gene