Aliases for PACRG-AS3 Gene

Subcategory (RNA class) for PACRG-AS3 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for PACRG-AS3 Gene

  • PACRG Antisense RNA 3 2 3 5
  • PACRG-AS3 2 168
  • NONHSAG045343 92
  • HSALNG0054915 167

External Ids for PACRG-AS3 Gene

Summaries for PACRG-AS3 Gene

GeneCards Summary for PACRG-AS3 Gene

PACRG-AS3 (PACRG Antisense RNA 3) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PACRG-AS3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PACRG-AS3 Gene

Genomics for PACRG-AS3 Gene

GeneHancer (GH) Regulatory Elements for PACRG-AS3 Gene

Promoters and enhancers for PACRG-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J163191 Enhancer 0.8 Ensembl ENCODE dbSUPER 510.7 -0.2 -197 1.7 EP300 POLR2A SMARCA4 EBF1 SOX13 PACRG-AS3 LOC105378095 PACRG
GH06J163190 Enhancer 0.3 dbSUPER 500.7 +1.9 1859 0.2 CBX8 PACRG-AS3 ENSG00000285553 PACRG
GH06J163194 Enhancer 0.2 dbSUPER 500.7 -1.4 -1396 0.4 PACRG-AS3 LOC105378095 PACRG
GH06J163230 Enhancer 0.6 Ensembl dbSUPER 37.6 -39.8 -39763 0.4 ZNF316 MAFF MAFK FOXA1 FOXA2 EMSY PACRG-AS3 RF01210-347 lnc-PRKN-8 PACRG
GH06J163412 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.3 -226.3 -226263 12.6 EP300 HNRNPK ZBTB40 CTCF SIN3A NRF1 POLR2G USF1 NCOR1 PHF8 QKI PACRG-AS3 CAHM lnc-PRKN-23 lnc-QKI-6 lnc-PACRG-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PACRG-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PACRG-AS3 Gene

Genomic Locations for PACRG-AS3 Gene
chr6:163,163,830-163,192,038
(GRCh38/hg38)
Size:
28,209 bases
Orientation:
Minus strand
chr6:163,586,446-163,613,034
(GRCh37/hg19)
Size:
26,589 bases
Orientation:
Minus strand

Genomic View for PACRG-AS3 Gene

Genes around PACRG-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PACRG-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PACRG-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PACRG-AS3 Gene

Proteins for PACRG-AS3 Gene

Post-translational modifications for PACRG-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PACRG-AS3 Gene

Domains & Families for PACRG-AS3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PACRG-AS3 Gene

Function for PACRG-AS3 Gene

Phenotypes From GWAS Catalog for PACRG-AS3 Gene

Phenotypes for PACRG-AS3 Gene

genes like me logo Genes that share phenotypes with PACRG-AS3: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PACRG-AS3 Gene

Localization for PACRG-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PACRG-AS3 Gene

Pathways & Interactions for PACRG-AS3 Gene

PathCards logo

SuperPathways for PACRG-AS3 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PACRG-AS3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PACRG-AS3 Gene

Drugs & Compounds for PACRG-AS3 Gene

No Compound Related Data Available

Transcripts for PACRG-AS3 Gene

mRNA/cDNA for PACRG-AS3 Gene

30 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
28 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
5 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PACRG-AS3 Gene

No ASD Table

Relevant External Links for PACRG-AS3 Gene

GeneLoc Exon Structure for
PACRG-AS3

Expression for PACRG-AS3 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PACRG-AS3

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PACRG-AS3 Gene

Orthologs for PACRG-AS3 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for PACRG-AS3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 95 (a)
OneToOne
Species where no ortholog for PACRG-AS3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for PACRG-AS3 Gene

ENSEMBL:
Gene Tree for PACRG-AS3 (if available)
TreeFam:
Gene Tree for PACRG-AS3 (if available)

Paralogs for PACRG-AS3 Gene

No data available for Paralogs for PACRG-AS3 Gene

Variants for PACRG-AS3 Gene

Additional dbSNP identifiers (rs#s) for PACRG-AS3 Gene

Structural Variations from Database of Genomic Variants (DGV) for PACRG-AS3 Gene

Variant ID Type Subtype PubMed ID
esv2762628 CNV gain 21179565
nsv1026490 CNV gain 25217958

Additional Variant Information for PACRG-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PACRG-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PACRG-AS3 Gene

Disorders for PACRG-AS3 Gene

Additional Disease Information for PACRG-AS3

No disorders were found for PACRG-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PACRG-AS3 Gene

Publications for PACRG-AS3 Gene

No publications were found for PACRG-AS3 Gene.

Products for PACRG-AS3 Gene

Sources for PACRG-AS3 Gene