Aliases for PACRG-AS1 Gene

Subcategory (RNA class) for PACRG-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for PACRG-AS1 Gene

  • PACRG Antisense RNA 1 2 3 5
  • PACRG Antisense RNA 1 (Non-Protein Coding) 2 3
  • PACRG-AS1 2 168
  • NONHSAG045344 92
  • HSALNG0054922 167

External Ids for PACRG-AS1 Gene

Previous GeneCards Identifiers for PACRG-AS1 Gene

  • GC06M163732

Summaries for PACRG-AS1 Gene

GeneCards Summary for PACRG-AS1 Gene

PACRG-AS1 (PACRG Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PACRG-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PACRG-AS1 Gene

Genomics for PACRG-AS1 Gene

GeneHancer (GH) Regulatory Elements for PACRG-AS1 Gene

Promoters and enhancers for PACRG-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J163324 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -0.3 -271 2.8 TCF12 CUX1 ZBTB26 ZKSCAN8 KMT2B KDM1A CREB1 FOXA2 POLR2A FOSL2 PACRG-AS1 PACRG-AS3 QKI lnc-PRKN-12
GH06J163322 Enhancer 0.3 Ensembl dbSUPER 500.7 +1.6 1629 0.2 PACRG-AS1 PACRG-AS3 piR-56341-209
GH06J163319 Enhancer 0.7 Ensembl dbSUPER 0.7 +4.0 4029 1.4 FOXA2 JUND RAD21 RXRA HNF4A NFIA HNF4G SP1 PACRG-AS3 PACRG-AS1 piR-56341-209
GH06J163309 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +14.6 14605 1.8 ZNF316 PBX2 FOS CEBPG ATF4 MEIS2 CEBPB JUN SUZ12 L3MBTL2 PACRG-AS3 PACRG-AS1 piR-56341-209 PACRG
GH06J163331 Enhancer 0.9 FANTOM5 Ensembl dbSUPER 0.4 -7.3 -7271 1.2 ZNF263 E2F6 EGR1 L3MBTL2 MAX USF1 MNT QKI lnc-PRKN-12 PACRG-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PACRG-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PACRG-AS1 Gene

Genomic Locations for PACRG-AS1 Gene
chr6:163,306,907-163,324,530
(GRCh38/hg38)
Size:
17,624 bases
Orientation:
Minus strand
chr6:163,731,017-163,745,505
(GRCh37/hg19)
Size:
14,489 bases
Orientation:
Minus strand

Genomic View for PACRG-AS1 Gene

Genes around PACRG-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PACRG-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PACRG-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PACRG-AS1 Gene

Proteins for PACRG-AS1 Gene

Post-translational modifications for PACRG-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PACRG-AS1 Gene

Domains & Families for PACRG-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PACRG-AS1 Gene

Function for PACRG-AS1 Gene

Phenotypes From GWAS Catalog for PACRG-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PACRG-AS1 Gene

Localization for PACRG-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PACRG-AS1 Gene

Pathways & Interactions for PACRG-AS1 Gene

PathCards logo

SuperPathways for PACRG-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PACRG-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PACRG-AS1 Gene

Drugs & Compounds for PACRG-AS1 Gene

No Compound Related Data Available

Transcripts for PACRG-AS1 Gene

mRNA/cDNA for PACRG-AS1 Gene

11 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
1 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PACRG-AS1 Gene

No ASD Table

Relevant External Links for PACRG-AS1 Gene

GeneLoc Exon Structure for
PACRG-AS1

Expression for PACRG-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PACRG-AS1

SOURCE GeneReport for Unigene cluster for PACRG-AS1 Gene:

Hs.668693
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PACRG-AS1 Gene

Orthologs for PACRG-AS1 Gene

Evolution for PACRG-AS1 Gene

ENSEMBL:
Gene Tree for PACRG-AS1 (if available)
TreeFam:
Gene Tree for PACRG-AS1 (if available)

No data available for Orthologs for PACRG-AS1 Gene

Paralogs for PACRG-AS1 Gene

No data available for Paralogs for PACRG-AS1 Gene

Variants for PACRG-AS1 Gene

Additional dbSNP identifiers (rs#s) for PACRG-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PACRG-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1032e201 CNV deletion 23290073
dgv1033e201 CNV deletion 23290073
dgv3434n106 CNV deletion 24896259
esv2733112 CNV deletion 23290073
esv2733118 CNV deletion 23290073
esv3304104 CNV mobile element insertion 20981092
esv3308672 CNV mobile element insertion 20981092
esv3374330 CNV insertion 20981092
esv3390 CNV loss 18987735
esv3540820 CNV deletion 23714750
nsv509165 CNV insertion 20534489
nsv605188 CNV loss 21841781

Additional Variant Information for PACRG-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PACRG-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PACRG-AS1 Gene

Disorders for PACRG-AS1 Gene

Additional Disease Information for PACRG-AS1

No disorders were found for PACRG-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PACRG-AS1 Gene

Publications for PACRG-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for PACRG-AS1 Gene

Sources for PACRG-AS1 Gene