Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PABPC4L Gene

Aliases for PABPC4L Gene

  • Poly(A) Binding Protein Cytoplasmic 4 Like 2 3 5
  • PABP-4-Like 3 4
  • Poly(A) Binding Protein, Cytoplasmic 4-Like 2
  • Polyadenylate-Binding Protein 4-Like 3
  • Poly(A)-Binding Protein 4-Like 4

External Ids for PABPC4L Gene

Previous GeneCards Identifiers for PABPC4L Gene

  • GC00U921646
  • GC04M135336
  • GC04M135117
  • GC04M130845

Summaries for PABPC4L Gene

GeneCards Summary for PABPC4L Gene

PABPC4L (Poly(A) Binding Protein Cytoplasmic 4 Like) is a Protein Coding gene. Among its related pathways are RNA transport and Deadenylation-dependent mRNA decay. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is PABPC4.

UniProtKB/Swiss-Prot for PABPC4L Gene

  • May bind RNA.

Additional gene information for PABPC4L Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PABPC4L Gene

Genomics for PABPC4L Gene

GeneHancer (GH) Regulatory Elements for PABPC4L Gene

Promoters and enhancers for PABPC4L Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I134200 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 556.6 +0.2 170 2 HDGF NFIB L3MBTL2 CEBPB ZNF384 FOXM1 ZNF217 GATA3 ZFX PABPC4L ENSG00000251388
GH04I134544 Enhancer 0.5 ENCODE 4.5 -342.7 -342733 0.2 HIC1 STAT1 JUND PKNOX1 STAT3 EP300 TRIM28 LOC105377436 PABPC4L LINC02462
GH04I134552 Enhancer 0.4 ENCODE 4.5 -350.6 -350563 0.1 SP1 USF1 POU5F1 PABPC4L LINC02462 LOC105377436 GC04P134581
GH04I134028 Enhancer 0.4 ENCODE 0.1 +173.6 173587 0.2 FOSL1 FOS ENSG00000251388 PABPC4L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PABPC4L on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the PABPC4L gene promoter:

Genomic Locations for PABPC4L Gene

Genomic Locations for PABPC4L Gene
chr4:134,196,333-134,201,748
(GRCh38/hg38)
Size:
5,416 bases
Orientation:
Minus strand
chr4:135,117,488-135,122,903
(GRCh37/hg19)

Genomic View for PABPC4L Gene

Genes around PABPC4L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PABPC4L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PABPC4L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PABPC4L Gene

Proteins for PABPC4L Gene

  • Protein details for PABPC4L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CB38-PAB4L_HUMAN
    Recommended name:
    Polyadenylate-binding protein 4-like
    Protein Accession:
    P0CB38

    Protein attributes for PABPC4L Gene

    Size:
    370 amino acids
    Molecular mass:
    41854 Da
    Quaternary structure:
    No Data Available

neXtProt entry for PABPC4L Gene

Post-translational modifications for PABPC4L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PABPC4L Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for PABPC4L Gene

Domains & Families for PABPC4L Gene

Gene Families for PABPC4L Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for PABPC4L Gene

Suggested Antigen Peptide Sequences for PABPC4L Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P0CB38

UniProtKB/Swiss-Prot:

PAB4L_HUMAN :
  • Belongs to the polyadenylate-binding protein type-1 family.
Family:
  • Belongs to the polyadenylate-binding protein type-1 family.
genes like me logo Genes that share domains with PABPC4L: view

Function for PABPC4L Gene

Molecular function for PABPC4L Gene

UniProtKB/Swiss-Prot Function:
May bind RNA.

Phenotypes From GWAS Catalog for PABPC4L Gene

Gene Ontology (GO) - Molecular Function for PABPC4L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IEA --
genes like me logo Genes that share ontologies with PABPC4L: view

Phenotypes for PABPC4L Gene

GenomeRNAi human phenotypes for PABPC4L:
genes like me logo Genes that share phenotypes with PABPC4L: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PABPC4L Gene

Localization for PABPC4L Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PABPC4L Gene

Pathways & Interactions for PABPC4L Gene

genes like me logo Genes that share pathways with PABPC4L: view

Pathways by source for PABPC4L Gene

3 KEGG pathways for PABPC4L Gene

Interacting Proteins for PABPC4L Gene

Selected Interacting proteins: P0CB38-PAB4L_HUMAN for PABPC4L Gene via IID

Gene Ontology (GO) - Biological Process for PABPC4L Gene

None

No data available for SIGNOR curated interactions for PABPC4L Gene

Drugs & Compounds for PABPC4L Gene

No Compound Related Data Available

Transcripts for PABPC4L Gene

mRNA/cDNA for PABPC4L Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(13) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PABPC4L Gene

Poly(A) binding protein, cytoplasmic 4-like:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PABPC4L Gene

No ASD Table

Relevant External Links for PABPC4L Gene

GeneLoc Exon Structure for
PABPC4L
ECgene alternative splicing isoforms for
PABPC4L

Expression for PABPC4L Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PABPC4L Gene

mRNA differential expression in normal tissues according to GTEx for PABPC4L Gene

This gene is overexpressed in Heart - Atrial Appendage (x4.4).

Protein differential expression in normal tissues from HIPED for PABPC4L Gene

This gene is overexpressed in Bone marrow mesenchymal stem cell (56.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for PABPC4L Gene



NURSA nuclear receptor signaling pathways regulating expression of PABPC4L Gene:

PABPC4L

SOURCE GeneReport for Unigene cluster for PABPC4L Gene:

Hs.49889
genes like me logo Genes that share expression patterns with PABPC4L: view

No data available for Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PABPC4L Gene

Orthologs for PABPC4L Gene

This gene was present in the common ancestor of chordates.

Orthologs for PABPC4L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PABPC4L 33
  • 99.53 (n)
cow
(Bos Taurus)
Mammalia LOC101908085 33
  • 88.35 (n)
mouse
(Mus musculus)
Mammalia Pabpc4l 33 16 34
  • 81.26 (n)
rat
(Rattus norvegicus)
Mammalia Pabpc4l 33
  • 80.99 (n)
dog
(Canis familiaris)
Mammalia PABPC4L 33
  • 71.54 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 60 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii pabpc4 34
  • 46 (a)
OneToMany
Species where no ortholog for PABPC4L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PABPC4L Gene

ENSEMBL:
Gene Tree for PABPC4L (if available)
TreeFam:
Gene Tree for PABPC4L (if available)

Paralogs for PABPC4L Gene

(14) SIMAP similar genes for PABPC4L Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with PABPC4L: view

Variants for PABPC4L Gene

Sequence variations from dbSNP and Humsavar for PABPC4L Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000001625 -- 134,163,880(-) AAAATCATAGTTAA/A genic_downstream_transcript_variant, intron_variant
rs1000028957 -- 134,123,922(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000049820 -- 134,090,662(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000054305 -- 134,117,529(-) T/A genic_downstream_transcript_variant, intron_variant
rs1000057020 -- 134,131,113(-) C/A genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PABPC4L Gene

Variant ID Type Subtype PubMed ID
dgv5397n100 CNV loss 25217958
dgv9275n54 CNV loss 21841781
dgv9276n54 CNV loss 21841781
dgv9277n54 CNV loss 21841781
esv3569696 CNV loss 25503493
esv3569699 CNV loss 25503493
esv3602304 CNV loss 21293372
nsv1026397 CNV loss 25217958
nsv461648 CNV loss 19166990
nsv520680 CNV loss 19592680
nsv595493 CNV loss 21841781

Variation tolerance for PABPC4L Gene

Gene Damage Index Score: 2.17; 39.37% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for PABPC4L Gene

Human Gene Mutation Database (HGMD)
PABPC4L
SNPedia medical, phenotypic, and genealogical associations of SNPs for
PABPC4L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PABPC4L Gene

Disorders for PABPC4L Gene

Additional Disease Information for PABPC4L

No disorders were found for PABPC4L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PABPC4L Gene

Publications for PABPC4L Gene

  1. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 58
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3 58
  4. Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits. (PMID: 23754948) Randall JC … Heid IM (PLoS genetics 2013) 3 58
  5. Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project. (PMID: 21347282) Lettre G … Boerwinkle E (PLoS genetics 2011) 44 58

Products for PABPC4L Gene

Sources for PABPC4L Gene

Content
Loading form....