Aliases for PABPC4-AS1 Gene

Data sources for PABPC4-AS1 Gene:

RNA type for PABPC4-AS1 Gene

lncRNA

Aliases for PABPC4-AS1 Gene

External Ids for PABPC4-AS1 Gene

Summaries for PABPC4-AS1 Gene

GeneCards Summary for PABPC4-AS1 Gene

PABPC4-AS1 (PABPC4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are Actin Nucleation by ARP-WASP Complex and ERK Signaling.

Additional gene information for PABPC4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PABPC4-AS1 Gene

Genomics for PABPC4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PABPC4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J039566 Enhancer 0.9 ENCODE dbSUPER 250.7 +2.0 1960 1.7 CEBPA ZNF10 NFIC YY1 MXD4 SMAD5 SMAD4 RXRA SAP130 RARA PABPC4-AS1 SNORA55 lnc-PABPC4-4 lnc-HEYL-5 OXCT2 OXCT2P1 PABPC4 BMP8A
GH01J039565 Promoter/Enhancer 0.6 EPDnew dbSUPER 250.7 0.0 -8 0.1 POLR2A PABPC4-AS1 lnc-PABPC4-4 HSALNG0002775 PABPC4 BMP8A
GH01J038871 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 23.8 -691.9 -691851 2.8 SP1 MYC POLR2A ZBTB10 YY1 MXD4 CTCF SMAD5 SIN3A ETS1 MYCBP ENSG00000273637 lnc-AKIRIN1-15 SF3A3 PPIE INPP5B PABPC4-AS1 SNORA55 AKIRIN1 PPIEL
GH01J040036 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 15 +475.2 475198 8.3 BCLAF1 SP1 ZNF207 IKZF1 NCOR1 MYC ZNF600 SIX5 ZNF580 ZNF592 CAP1 LOC105378669 lnc-PPT1-4 PPT1 PPIE TRIT1 PABPC4-AS1 SNORA55 EXO5 PPIEL
GH01J040160 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 15 +597.2 597249 3.8 SP1 ZNF207 IKZF1 ZNF600 MYC SIX5 ZNF580 ATF2 KLF9 POLR2A LOC105378671 RLF lnc-PPT1-1 ENSG00000259943 PPIE PPT1 PABPC4-AS1 SNORA55 EXO5 TRIT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PABPC4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PABPC4-AS1 Gene

Latest Assembly
chr1:39,565,052-39,573,860
(GRCh38/hg38)
Size:
8,809 bases
Orientation:
Plus strand

Previous Assembly
chr1:40,030,742-40,038,875
(GRCh37/hg19 by Entrez Gene)
Size:
8,134 bases
Orientation:
Plus strand

chr1:40,030,832-40,038,875
(GRCh37/hg19 by Ensembl)
Size:
8,044 bases
Orientation:
Plus strand

Genomic View for PABPC4-AS1 Gene

Genes around PABPC4-AS1 on UCSC Golden Path with GeneCards custom track
PABPC4-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PABPC4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PABPC4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PABPC4-AS1 Gene

Proteins for PABPC4-AS1 Gene

Post-translational modifications for PABPC4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PABPC4-AS1 Gene

Domains & Families for PABPC4-AS1 Gene

Gene Families for PABPC4-AS1 Gene

genes like me logo Genes that share domains with PABPC4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PABPC4-AS1 Gene

Function for PABPC4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PABPC4-AS1 Gene

Localization for PABPC4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PABPC4-AS1 Gene

Pathways & Interactions for PABPC4-AS1 Gene

PathCards logo

SuperPathways for PABPC4-AS1 Gene

SuperPathway Contained pathways
1 ERK Signaling
.61
2 Actin Nucleation by ARP-WASP Complex
.35
genes like me logo Genes that share pathways with PABPC4-AS1: view

Pathways by source for PABPC4-AS1 Gene

2 Qiagen pathways for PABPC4-AS1 Gene
  • Rho Family GTPases
  • RhoA Pathway

Gene Ontology (GO) - Biological Process for PABPC4-AS1 Gene

None

No data available for Interacting Proteins and SIGNOR curated interactions for PABPC4-AS1 Gene

Drugs & Compounds for PABPC4-AS1 Gene

No Compound Related Data Available

Transcripts for PABPC4-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PABPC4-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF643B_9606 lncRNA 1316 1

Ensembl: ENST00000415255 (view in UCSC) ,

URS00007E4259_9606 lncRNA 641 1

RefSeq: NR_125979,

URS0000DB9975_9606 lncRNA 487 1

Ensembl: ENST00000650144 (view in UCSC) ,

URS0000167501_9606 lncRNA 551 2

LncBook: HSALNT0005325,

NONCODE: NONHSAT002587.2,

PABPC4-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PABPC4-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PABPC4-AS1 Gene

No ASD Table

Relevant External Links for PABPC4-AS1 Gene

GeneLoc Exon Structure for
PABPC4-AS1

Expression for PABPC4-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PABPC4-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PABPC4-AS1 Gene

Orthologs for PABPC4-AS1 Gene

Evolution for PABPC4-AS1 Gene

ENSEMBL:
Gene Tree for PABPC4-AS1 (if available)
TreeFam:
Gene Tree for PABPC4-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for PABPC4-AS1

No data available for Orthologs for PABPC4-AS1 Gene

Paralogs for PABPC4-AS1 Gene

No data available for Paralogs for PABPC4-AS1 Gene

Variants for PABPC4-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PABPC4-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for PABPC4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PABPC4-AS1
Leiden Open Variation Database (LOVD)
PABPC4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PABPC4-AS1 Gene

Disorders for PABPC4-AS1 Gene

No disorders were found for PABPC4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PABPC4-AS1 Gene

Publications for PABPC4-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for PABPC4-AS1 Gene

Sources for PABPC4-AS1 Gene