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Aliases for P2RX5-TAX1BP3 Gene

Subcategory (RNA class) for P2RX5-TAX1BP3 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for P2RX5-TAX1BP3 Gene

  • P2RX5-TAX1BP3 Readthrough (NMD Candidate) 2 3 5

External Ids for P2RX5-TAX1BP3 Gene

Previous GeneCards Identifiers for P2RX5-TAX1BP3 Gene

  • GC17U901601
  • GC17M003569

Summaries for P2RX5-TAX1BP3 Gene

Entrez Gene Summary for P2RX5-TAX1BP3 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring P2RX5 (purinergic receptor P2X, ligand-gated ion channel, 5) and TAX1BP3 (Tax1 binding protein 3) genes on chromosome 17. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Mar 2011]

GeneCards Summary for P2RX5-TAX1BP3 Gene

P2RX5-TAX1BP3 (P2RX5-TAX1BP3 Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class. Gene Ontology (GO) annotations related to this gene include ion channel activity and purinergic nucleotide receptor activity. An important paralog of this gene is P2RX5.

Additional gene information for P2RX5-TAX1BP3 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for P2RX5-TAX1BP3 Gene

Genomics for P2RX5-TAX1BP3 Gene

GeneHancer (GH) Regulatory Elements for P2RX5-TAX1BP3 Gene

Promoters and enhancers for P2RX5-TAX1BP3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I003690 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.8 +2.3 2255 8.1 HDGF PKNOX1 SIN3A FEZF1 IRF4 ZNF121 ZNF207 ZNF143 ATF7 RUNX3 P2RX5 HASPIN P2RX5-TAX1BP3 EMC6
GH17I003665 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.3 +28.5 28477 4.2 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 POLR2B TAX1BP3 EMC6 CTNS P2RX5 HASPIN RPL21P125 P2RX5-TAX1BP3
GH17I003710 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -15.6 -15588 3.1 HDGF HDAC1 SMAD1 BMI1 IRF4 TCF12 ZNF121 EGR1 ATF7 ETV6 HASPIN ENSG00000262692 P2RX5 P2RX5-TAX1BP3
GH17I003681 Enhancer 1 Ensembl ENCODE 0.4 +13.9 13910 2 HDGF RB1 KLF17 ZNF2 RAD21 ZNF207 ZNF143 ATF7 IKZF2 RUNX3 EMC6 P2RX5-TAX1BP3 P2RX5
GH17I003719 Enhancer 0.9 Ensembl ENCODE 0.3 -24.1 -24123 2.5 JUN FOSL1 FOSL2 NFE2 FOS TCF7L2 ZNF362 E2F5 CEBPB DPF2 ENSG00000262692 HASPIN P2RX5-TAX1BP3 P2RX5 ITGAE
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around P2RX5-TAX1BP3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for P2RX5-TAX1BP3 Gene

Genomic Locations for P2RX5-TAX1BP3 Gene
chr17:3,662,893-3,696,404
(GRCh38/hg38)
Size:
33,512 bases
Orientation:
Minus strand
chr17:3,566,187-3,599,698
(GRCh37/hg19)

Genomic View for P2RX5-TAX1BP3 Gene

Genes around P2RX5-TAX1BP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
P2RX5-TAX1BP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for P2RX5-TAX1BP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for P2RX5-TAX1BP3 Gene

Proteins for P2RX5-TAX1BP3 Gene

Post-translational modifications for P2RX5-TAX1BP3 Gene

No Post-translational modifications

Other Protein References for P2RX5-TAX1BP3 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for P2RX5-TAX1BP3 Gene

Domains & Families for P2RX5-TAX1BP3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for P2RX5-TAX1BP3 Gene

Function for P2RX5-TAX1BP3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for P2RX5-TAX1BP3 Gene

Localization for P2RX5-TAX1BP3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for P2RX5-TAX1BP3 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for P2RX5-TAX1BP3 Gene

Pathways & Interactions for P2RX5-TAX1BP3 Gene

SuperPathways for P2RX5-TAX1BP3 Gene

No Data Available

Interacting Proteins for P2RX5-TAX1BP3 Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000455681%0d%0a9606.ENSP00000336607%0d%0a9606.ENSP00000343339%0d%0a9606.ENSP00000442349%0d%0a
Selected Interacting proteins: ENSP00000455681 for P2RX5-TAX1BP3 Gene via STRING

Gene Ontology (GO) - Biological Process for P2RX5-TAX1BP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for P2RX5-TAX1BP3 Gene

Drugs & Compounds for P2RX5-TAX1BP3 Gene

No Compound Related Data Available

Transcripts for P2RX5-TAX1BP3 Gene

mRNA/cDNA for P2RX5-TAX1BP3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for P2RX5-TAX1BP3 Gene

No ASD Table

Relevant External Links for P2RX5-TAX1BP3 Gene

GeneLoc Exon Structure for
P2RX5-TAX1BP3
ECgene alternative splicing isoforms for
P2RX5-TAX1BP3

Expression for P2RX5-TAX1BP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for P2RX5-TAX1BP3 Gene

genes like me logo Genes that share expression patterns with P2RX5-TAX1BP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for P2RX5-TAX1BP3 Gene

Orthologs for P2RX5-TAX1BP3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for P2RX5-TAX1BP3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 99 (a)
OneToMany
dog
(Canis familiaris)
Mammalia P2X5 34
  • 74 (a)
OneToMany
mouse
(Mus musculus)
Mammalia P2rx5 34
  • 63 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 61 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 34
  • 60 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 57 (a)
OneToMany
chicken
(Gallus gallus)
Aves P2RX5 34
  • 65 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii p2rx5 34
  • 45 (a)
ManyToMany
p2rx8 34
  • 42 (a)
ManyToMany
Species where no ortholog for P2RX5-TAX1BP3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for P2RX5-TAX1BP3 Gene

ENSEMBL:
Gene Tree for P2RX5-TAX1BP3 (if available)
TreeFam:
Gene Tree for P2RX5-TAX1BP3 (if available)

Paralogs for P2RX5-TAX1BP3 Gene

Paralogs for P2RX5-TAX1BP3 Gene

genes like me logo Genes that share paralogs with P2RX5-TAX1BP3: view

Variants for P2RX5-TAX1BP3 Gene

Sequence variations from dbSNP and Humsavar for P2RX5-TAX1BP3 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1128098 likely-benign, Cystinosis, Nephropathic cystinosis 3,662,919(-) G/A non_coding_transcript_variant
rs1128109 likely-benign, Cystinosis, Nephropathic cystinosis 3,662,915(-) G/C non_coding_transcript_variant
rs161397 benign, Nephropathic cystinosis, Cystinosis 3,662,675(-) T/C downstream_transcript_variant
rs184828971 uncertain-significance, Cystinosis, Nephropathic cystinosis 3,662,405(-) G/A downstream_transcript_variant
rs397702352 benign, Cystinosis, Nephropathic cystinosis 3,662,752(-) C/CC downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for P2RX5-TAX1BP3 Gene

Variant ID Type Subtype PubMed ID
dgv1406n106 CNV deletion 24896259
dgv3085n100 CNV loss 25217958
dgv358n27 CNV loss 19166990
dgv5423n54 CNV loss 21841781
dgv5424n54 CNV gain 21841781
dgv5425n54 CNV loss 21841781
dgv5426n54 CNV gain+loss 21841781
dgv5427n54 CNV gain 21841781
dgv5428n54 CNV loss 21841781
esv1195616 CNV deletion 17803354
esv1604795 CNV deletion 17803354
esv2094472 CNV deletion 18987734
esv22375 CNV gain+loss 19812545
esv2715531 CNV deletion 23290073
esv3447841 CNV duplication 20981092
nsv1055740 CNV gain 25217958
nsv1065489 CNV gain 25217958
nsv1070796 CNV deletion 25765185
nsv111790 CNV deletion 16902084
nsv1947 CNV insertion 18451855
nsv1948 CNV deletion 18451855
nsv512471 CNV loss 21212237
nsv574237 CNV loss 21841781
nsv574244 CNV loss 21841781
nsv574246 CNV gain+loss 21841781
nsv574262 CNV loss 21841781
nsv827860 CNV loss 20364138
nsv833342 CNV loss 17160897
nsv952107 CNV deletion 24416366
nsv960399 CNV duplication 23825009

Additional Variant Information for P2RX5-TAX1BP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
P2RX5-TAX1BP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for P2RX5-TAX1BP3 Gene

Disorders for P2RX5-TAX1BP3 Gene

Additional Disease Information for P2RX5-TAX1BP3

No disorders were found for P2RX5-TAX1BP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for P2RX5-TAX1BP3 Gene

Publications for P2RX5-TAX1BP3 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 58
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for P2RX5-TAX1BP3 Gene

Sources for P2RX5-TAX1BP3 Gene

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