Aliases for OXCT2P1 Gene

Aliases for OXCT2P1 Gene

  • 3-Oxoacid CoA-Transferase 2 Pseudogene 1 2 3 5
  • 3-Oxoacid CoA Transferase 2 Pseudogene 2 3
  • Scot-T Pseudogene 3
  • OXCT2P 3

External Ids for OXCT2P1 Gene

Previous HGNC Symbols for OXCT2P1 Gene

  • OXCT2P

Previous GeneCards Identifiers for OXCT2P1 Gene

  • GC01P039981
  • GC01P038099

Summaries for OXCT2P1 Gene

GeneCards Summary for OXCT2P1 Gene

OXCT2P1 (3-Oxoacid CoA-Transferase 2 Pseudogene 1) is a Pseudogene.

Additional gene information for OXCT2P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OXCT2P1 Gene

Genomics for OXCT2P1 Gene

GeneHancer (GH) Regulatory Elements for OXCT2P1 Gene

Promoters and enhancers for OXCT2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J039513 Promoter/Enhancer 0.7 Ensembl dbSUPER 505.6 +0.4 438 1.8 IKZF1 BHLHE40 EZH2 OXCT2P1 piR-44851 BMP8A
GH01J039572 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 15.7 +60.2 60177 4.9 EP300 CTCF SIN3A MYC NRF1 USF1 POLR2G SP1 GTF2E2 ZNF10 PABPC4 OXCT2P1 OXCT2 ENSG00000226438 lnc-HEYL-4 PABPC4-AS1
GH01J040372 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.9 +861.0 860990 5.9 ZNF217 EP300 ZSCAN5C SIN3A NRF1 POLR2G RBAK FOS ZNF639 ZNF10 SMAP2 piR-50443-014 PPIEL PPIE EXO5 TRIT1 ENSG00000259943 RLF NFYC-AS1 SLFNL1
GH01J039404 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.8 -105.9 -105937 8.2 EP300 CTCF NRF1 POLR2G NCOR1 ZFX REST ZNF263 ZBTB11 RBM34 PPIE RRAGC MYCBP OXCT2P1 ENSG00000226438 BMP8B KIAA0754 piR-53450 lnc-PABPC4-5 MACF1
GH01J040256 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 9.9 +743.2 743150 3.6 EP300 RXRA FOXK2 ZBTB40 ZNF217 ZSCAN5C TCF12 SIN3A NRF1 POLR2G ENSG00000259943 ZMPSTE24 PPIE PPIEL EXO5 TRIT1 RLF COL9A2 NFYC ZFP69
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OXCT2P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for OXCT2P1 Gene

Genomic Locations for OXCT2P1 Gene
chr1:39,514,863-39,516,667
(GRCh38/hg38)
Size:
1,805 bases
Orientation:
Plus strand
chr1:39,980,535-39,982,339
(GRCh37/hg19)
Size:
1,805 bases
Orientation:
Plus strand

Genomic View for OXCT2P1 Gene

Genes around OXCT2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OXCT2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OXCT2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OXCT2P1 Gene

Proteins for OXCT2P1 Gene

Post-translational modifications for OXCT2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OXCT2P1 Gene

Domains & Families for OXCT2P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for OXCT2P1 Gene

Function for OXCT2P1 Gene

Phenotypes From GWAS Catalog for OXCT2P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OXCT2P1 Gene

Localization for OXCT2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OXCT2P1 Gene

Pathways & Interactions for OXCT2P1 Gene

PathCards logo

SuperPathways for OXCT2P1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for OXCT2P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for OXCT2P1 Gene

Drugs & Compounds for OXCT2P1 Gene

No Compound Related Data Available

Transcripts for OXCT2P1 Gene

mRNA/cDNA for OXCT2P1 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for OXCT2P1 Gene

No ASD Table

Relevant External Links for OXCT2P1 Gene

GeneLoc Exon Structure for
OXCT2P1

Expression for OXCT2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OXCT2P1 Gene

mRNA differential expression in normal tissues according to GTEx for OXCT2P1 Gene

This gene is overexpressed in Testis (x9.9) and Heart - Atrial Appendage (x7.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for OXCT2P1

genes like me logo Genes that share expression patterns with OXCT2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OXCT2P1 Gene

Orthologs for OXCT2P1 Gene

Evolution for OXCT2P1 Gene

ENSEMBL:
Gene Tree for OXCT2P1 (if available)
TreeFam:
Gene Tree for OXCT2P1 (if available)

No data available for Orthologs for OXCT2P1 Gene

Paralogs for OXCT2P1 Gene

No data available for Paralogs for OXCT2P1 Gene

Variants for OXCT2P1 Gene

Additional Variant Information for OXCT2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OXCT2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OXCT2P1 Gene

Disorders for OXCT2P1 Gene

Additional Disease Information for OXCT2P1

No disorders were found for OXCT2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OXCT2P1 Gene

Publications for OXCT2P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54
  2. Cloning and characterization of a human orthologue of testis-specific succinyl CoA: 3-oxo acid CoA transferase (Scot-t) cDNA. (PMID: 11756565) Tanaka H … Nishimune Y (Molecular human reproduction 2002) 3 54

Products for OXCT2P1 Gene

Sources for OXCT2P1 Gene