Aliases for OXCT1-AS1 Gene

Subcategory (RNA class) for OXCT1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for OXCT1-AS1 Gene

  • OXCT1 Antisense RNA 1 2 3 5
  • OXCT1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Lnc-C5orf51-6 168
  • NONHSAG040269 92
  • HSALNG0041428 167
  • OXCT1-AS1 2

External Ids for OXCT1-AS1 Gene

Summaries for OXCT1-AS1 Gene

GeneCards Summary for OXCT1-AS1 Gene

OXCT1-AS1 (OXCT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for OXCT1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OXCT1-AS1 Gene

Genomics for OXCT1-AS1 Gene

GeneHancer (GH) Regulatory Elements for OXCT1-AS1 Gene

Promoters and enhancers for OXCT1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J041869 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 +0.3 275 2.8 ZBTB40 EP300 SIN3A NRF1 POLR2G GTF2E2 ZFX ZIC2 POLR2A ZBTB11 OXCT1 ENSG00000286164 LOC102723752 OXCT1-AS1 C5orf51 FBXO4
GH05J041871 Enhancer 0.7 ENCODE 500.7 +1.9 1946 0.4 BCL11A FOS KLF8 ZNF513 STAT3 ZNF189 ZNF843 PRDM6 ZNF24 INSM2 OXCT1 OXCT1-AS1 C5orf51 FBXO4 ENSG00000286164 LOC102723752 RPS2P22
GH05J041903 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 10 +34.6 34574 2.6 ZBTB40 ZNF217 EP300 SIN3A NRF1 TCF12 POLR2G USF1 SP1 NCOR1 C5orf51 FBXO4 SERBP1P6 OXCT1-AS1 CCDC152 piR-43451
GH05J041747 Enhancer 0.8 Ensembl 10.9 -122.4 -122427 0.2 ZSCAN5C ZNF300 ZNF10 ZNF510 MYC ZNF662 ZNF491 ZNF132 ZNF195 NFIC FBXO4 OXCT1-AS1 lnc-PLCXD3-2 RF00017-4598 OXCT1
GH05J041921 Enhancer 0.8 Ensembl ENCODE 10.8 +52.0 51974 1.8 EP300 ZNF384 FOS SUPT5H NFE2 ZNF664 ATF4 TBX21 JUN SPI1 LOC100419715 piR-37730 OXCT1 OXCT1-AS1 FBXO4 C5orf51 HSALNG0041434
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OXCT1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for OXCT1-AS1 Gene

Genomic Locations for OXCT1-AS1 Gene
chr5:41,869,927-41,872,475
(GRCh38/hg38)
Size:
2,549 bases
Orientation:
Plus strand
chr5:41,870,132-41,871,059
(GRCh37/hg19)
Size:
928 bases
Orientation:
Plus strand

Genomic View for OXCT1-AS1 Gene

Genes around OXCT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OXCT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OXCT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OXCT1-AS1 Gene

Proteins for OXCT1-AS1 Gene

Post-translational modifications for OXCT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OXCT1-AS1 Gene

Domains & Families for OXCT1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for OXCT1-AS1 Gene

Function for OXCT1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OXCT1-AS1 Gene

Localization for OXCT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OXCT1-AS1 Gene

Pathways & Interactions for OXCT1-AS1 Gene

PathCards logo

SuperPathways for OXCT1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for OXCT1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for OXCT1-AS1 Gene

Drugs & Compounds for OXCT1-AS1 Gene

No Compound Related Data Available

Transcripts for OXCT1-AS1 Gene

mRNA/cDNA for OXCT1-AS1 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for OXCT1-AS1 Gene

No ASD Table

Relevant External Links for OXCT1-AS1 Gene

GeneLoc Exon Structure for
OXCT1-AS1

Expression for OXCT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OXCT1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OXCT1-AS1 Gene

This gene is overexpressed in Heart - Left Ventricle (x6.0).
genes like me logo Genes that share expression patterns with OXCT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OXCT1-AS1 Gene

Orthologs for OXCT1-AS1 Gene

Evolution for OXCT1-AS1 Gene

ENSEMBL:
Gene Tree for OXCT1-AS1 (if available)
TreeFam:
Gene Tree for OXCT1-AS1 (if available)

No data available for Orthologs for OXCT1-AS1 Gene

Paralogs for OXCT1-AS1 Gene

No data available for Paralogs for OXCT1-AS1 Gene

Variants for OXCT1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for OXCT1-AS1 Gene

SNP ID Clinical significance and condition Chr 05 pos Variation AA Info Type
rs138037654 Likely Benign: Succinyl-CoA acetoacetate transferase deficiency 41,870,704(+) C/T
rs182767661 Uncertain Significance: Succinyl-CoA acetoacetate transferase deficiency 41,870,418(+) G/C NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT
rs1876654 Benign: Succinyl-CoA acetoacetate transferase deficiency 41,870,573(+) T/C
rs200129807 Uncertain Significance: Succinyl-CoA acetoacetate transferase deficiency; not provided 41,870,363(+) G/C NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT
rs368390833 Likely Benign: Succinyl-CoA acetoacetate transferase deficiency; not provided 41,870,266(+) T/TC FIVE_PRIME_UTR_VARIANT,INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for OXCT1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for OXCT1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1096e214 CNV gain 21293372
esv2762518 CNV loss 21179565
esv3604851 CNV gain 21293372
nsv4811 CNV deletion 18451855
nsv830271 CNV loss 17160897
nsv830272 CNV gain 17160897
nsv830273 CNV gain 17160897

Additional Variant Information for OXCT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OXCT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OXCT1-AS1 Gene

Disorders for OXCT1-AS1 Gene

Additional Disease Information for OXCT1-AS1

No disorders were found for OXCT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OXCT1-AS1 Gene

Publications for OXCT1-AS1 Gene

No publications were found for OXCT1-AS1 Gene.

Products for OXCT1-AS1 Gene

Sources for OXCT1-AS1 Gene