Aliases for OXCT1-AS1 Gene

Data sources for OXCT1-AS1 Gene:

RNA type for OXCT1-AS1 Gene

lncRNA

Aliases for OXCT1-AS1 Gene

External Ids for OXCT1-AS1 Gene

Summaries for OXCT1-AS1 Gene

GeneCards Summary for OXCT1-AS1 Gene

OXCT1-AS1 (OXCT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for OXCT1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OXCT1-AS1 Gene

Genomics for OXCT1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for OXCT1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OXCT1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for OXCT1-AS1 Gene

Latest Assembly
chr5:41,869,927-41,872,475
(GRCh38/hg38)
Size:
2,549 bases
Orientation:
Plus strand

Previous Assembly
chr5:41,870,132-41,872,343
(GRCh37/hg19 by Entrez Gene)
Size:
2,212 bases
Orientation:
Plus strand

chr5:41,870,132-41,871,059
(GRCh37/hg19 by Ensembl)
Size:
928 bases
Orientation:
Plus strand

Genomic View for OXCT1-AS1 Gene

Genes around OXCT1-AS1 on UCSC Golden Path with GeneCards custom track
OXCT1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
OXCT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OXCT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OXCT1-AS1 Gene

Proteins for OXCT1-AS1 Gene

Post-translational modifications for OXCT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OXCT1-AS1 Gene

Domains & Families for OXCT1-AS1 Gene

Gene Families for OXCT1-AS1 Gene

genes like me logo Genes that share domains with OXCT1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for OXCT1-AS1 Gene

Function for OXCT1-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OXCT1-AS1 Gene

Localization for OXCT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OXCT1-AS1 Gene

Pathways & Interactions for OXCT1-AS1 Gene

PathCards logo

SuperPathways for OXCT1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for OXCT1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for OXCT1-AS1 Gene

Drugs & Compounds for OXCT1-AS1 Gene

No Compound Related Data Available

Transcripts for OXCT1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for OXCT1-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075B18B_9606 lncRNA 1731 3

RefSeq: NR_046635,

Ensembl: ENST00000508458 (view in UCSC) ,

LncBook: HSALNT0087089,

URS0000EF4332_9606 lncRNA 2195 1

Ensembl: ENST00000654321 (view in UCSC) ,

URS0000D58804_9606 lncRNA 1832 1

LNCipedia: lnc-C5orf51-6:1,

URS0001BE95FA_9606 lncRNA 1831 1

LncBook: HSALNT0087092,

URS0001BEC3A2_9606 lncRNA 1731 1

LncBook: HSALNT0087089,

OXCT1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for OXCT1-AS1 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OXCT1-AS1 Gene

No ASD Table

Relevant External Links for OXCT1-AS1 Gene

GeneLoc Exon Structure for
OXCT1-AS1

Expression for OXCT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OXCT1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OXCT1-AS1 Gene

This gene is overexpressed in Heart - Left Ventricle (x6.0).
genes like me logo Genes that share expression patterns with OXCT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OXCT1-AS1 Gene

Orthologs for OXCT1-AS1 Gene

Evolution for OXCT1-AS1 Gene

ENSEMBL:
Gene Tree for OXCT1-AS1 (if available)
TreeFam:
Gene Tree for OXCT1-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for OXCT1-AS1

No data available for Orthologs for OXCT1-AS1 Gene

Paralogs for OXCT1-AS1 Gene

No data available for Paralogs for OXCT1-AS1 Gene

Variants for OXCT1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for OXCT1-AS1 Gene

SNP ID Clinical significance and condition Chr 05 pos Variation AA Info Type
838792 Uncertain Significance: Succinyl-CoA acetoacetate transferase deficiency 41,870,295(+) C/A
NM_000436.4(OXCT1):c.64G>T (p.Ala22Ser)
MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR
856000 Uncertain Significance: Succinyl-CoA acetoacetate transferase deficiency 41,870,320(+) G/C
NM_000436.4(OXCT1):c.39C>G (p.Leu13=)
NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT,FIVE_PRIME_UTR
906612 Uncertain Significance: Succinyl-CoA acetoacetate transferase deficiency 41,870,343(+) G/A
NM_000436.4(OXCT1):c.16C>T (p.Leu6Phe)
MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR
906613 Uncertain Significance: Succinyl-CoA acetoacetate transferase deficiency 41,870,461(+) C/T
NC_000005.10:g.41870461C>T
GENIC_UPSTREAM_TRANSCRIPT
907632 Uncertain Significance: Succinyl-CoA acetoacetate transferase deficiency 41,870,495(+) C/T
NC_000005.10:g.41870495C>T
GENIC_UPSTREAM_TRANSCRIPT

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for OXCT1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for OXCT1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1096e214 CNV gain 21293372
esv2762518 CNV loss 21179565
esv3604851 CNV gain 21293372
nsv4811 CNV deletion 18451855
nsv830271 CNV loss 17160897
nsv830272 CNV gain 17160897
nsv830273 CNV gain 17160897

Additional Variant Information for OXCT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OXCT1-AS1
Leiden Open Variation Database (LOVD)
OXCT1-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OXCT1-AS1 Gene

Disorders for OXCT1-AS1 Gene

Additional Disease Information for OXCT1-AS1

No disorders were found for OXCT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OXCT1-AS1 Gene

Publications for OXCT1-AS1 Gene

  1. Aging-regulated anti-apoptotic long non-coding RNA Sarrah augments recovery from acute myocardial infarction. (PMID: 32341350) Trembinski DJ … Boon RA (Nature communications 2020) 2 3
  2. Microarray expression profiles analysis revealed lncRNA OXCT1-AS1 promoted bladder cancer cell aggressiveness via miR-455-5p/JAK1 signaling. (PMID: 30609030) Chen JB … Xiong-Bing Z (Journal of cellular physiology 2019) 2 3

Products for OXCT1-AS1 Gene

Sources for OXCT1-AS1 Gene