Aliases for OVCH1-AS1 Gene

Data sources for OVCH1-AS1 Gene:

Subcategory (RNA class) for OVCH1-AS1 Gene

lncRNA

Aliases for OVCH1-AS1 Gene

External Ids for OVCH1-AS1 Gene

Previous GeneCards Identifiers for OVCH1-AS1 Gene

  • GC12P029543

Summaries for OVCH1-AS1 Gene

GeneCards Summary for OVCH1-AS1 Gene

OVCH1-AS1 (OVCH1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with OVCH1-AS1 include Hepatocellular Carcinoma.

Additional gene information for OVCH1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OVCH1-AS1 Gene

Genomics for OVCH1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for OVCH1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J029389 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 250.7 +1.4 1420 3 CEBPA CEBPB FOXA2 FOSL1 FOXP1 SPI1 SOX5 ZBTB33 HLF SOX6 OVCH1-AS1 LOC100506606 ERGIC2 piR-43105-107 OVCH1
GH12J029428 Enhancer 1 Ensembl ENCODE 0.3 +39.6 39625 4.2 CEBPB REST GTF2E2 CTCF MAX TRIM22 EP300 RXRA SMC3 ZBTB33 ERGIC2 OVCH1 LOC100506606 piR-37670 OVCH1-AS1 RF00017-1119
GH12J029392 Promoter 0.3 Ensembl 0.7 +3.2 3220 0.2 LOC100506606 OVCH1-AS1 piR-43105-107 ERGIC2 OVCH1
GH12J029402 Enhancer 0.4 FANTOM5 0.4 +13.0 12976 0.3 ZNF366 ZNF512 piR-43105-107 OVCH1-AS1 ERGIC2 OVCH1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OVCH1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for OVCH1-AS1 Gene

Latest Assembly
chr12:29,389,281-29,487,488
(GRCh38/hg38)
Size:
98,208 bases
Orientation:
Plus strand

Previous Assembly
chr12:29,542,227-29,640,257
(GRCh37/hg19 by Entrez Gene)
Size:
98,031 bases
Orientation:
Plus strand

chr12:29,542,227-29,640,421
(GRCh37/hg19 by Ensembl)
Size:
98,195 bases
Orientation:
Plus strand

Genomic View for OVCH1-AS1 Gene

Genes around OVCH1-AS1 on UCSC Golden Path with GeneCards custom track
OVCH1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
OVCH1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OVCH1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OVCH1-AS1 Gene

Proteins for OVCH1-AS1 Gene

Post-translational modifications for OVCH1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OVCH1-AS1 Gene

Domains & Families for OVCH1-AS1 Gene

Gene Families for OVCH1-AS1 Gene

genes like me logo Genes that share domains with OVCH1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for OVCH1-AS1 Gene

Function for OVCH1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OVCH1-AS1 Gene

Localization for OVCH1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OVCH1-AS1 Gene

Pathways & Interactions for OVCH1-AS1 Gene

PathCards logo

SuperPathways for OVCH1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for OVCH1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for OVCH1-AS1 Gene

Drugs & Compounds for OVCH1-AS1 Gene

No Compound Related Data Available

Transcripts for OVCH1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for OVCH1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000077BBB4_9606 lncRNA 745 4

Ensembl: ENST00000549411 (view in UCSC) ,

LncBook: HSALNT0187197,

LNCipedia: OVCH1-AS1:6,

NONCODE: NONHSAT027492.2,

URS000075E73F_9606 lncRNA 1001 3

RefSeq: NR_073172,

LNCipedia: OVCH1-AS1:2,

NONCODE: NONHSAT162001.1,

URS0000BC99B7_9606 lncRNA 5529 2

Ensembl: ENST00000641955 (view in UCSC) ,

LNCipedia: OVCH1-AS1:7,

URS0000762AA4_9606 lncRNA 963 2

Ensembl: ENST00000551108 (view in UCSC) ,

LNCipedia: OVCH1-AS1:4,

URS000075CEFB_9606 lncRNA 5291 1

RefSeq: NR_027451,

OVCH1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for OVCH1-AS1 Gene

7 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for OVCH1-AS1 Gene

No ASD Table

Relevant External Links for OVCH1-AS1 Gene

GeneLoc Exon Structure for
OVCH1-AS1

Expression for OVCH1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OVCH1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OVCH1-AS1 Gene

This gene is overexpressed in Testis (x17.3) and Whole Blood (x4.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for OVCH1-AS1

genes like me logo Genes that share expression patterns with OVCH1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OVCH1-AS1 Gene

Orthologs for OVCH1-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for OVCH1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia OVCH1-AS1 31
  • 99 (a)
OneToOne
Species where no ortholog for OVCH1-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for OVCH1-AS1 Gene

ENSEMBL:
Gene Tree for OVCH1-AS1 (if available)
TreeFam:
Gene Tree for OVCH1-AS1 (if available)

Paralogs for OVCH1-AS1 Gene

No data available for Paralogs for OVCH1-AS1 Gene

Variants for OVCH1-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for OVCH1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for OVCH1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv788n106 CNV deletion 24896259
esv1371683 CNV deletion 17803354
esv2354786 CNV deletion 18987734
esv2458414 CNV deletion 19546169
esv2745687 CNV deletion 23290073
esv29688 CNV gain 19812545
esv3253162 CNV deletion 24192839
esv3436761 CNV duplication 20981092
esv3548964 CNV deletion 23714750
esv3574 CNV loss 18987735
esv3580214 CNV loss 25503493
esv6212 CNV loss 19470904
esv997212 CNV deletion 20482838
nsv1069655 CNV deletion 25765185
nsv1070519 CNV deletion 25765185
nsv469190 CNV gain 19166990
nsv525100 CNV loss 19592680
nsv527807 CNV loss 19592680
nsv557915 CNV loss 21841781
nsv557916 CNV loss 21841781
nsv557917 CNV gain 21841781
nsv820607 CNV deletion 20802225
nsv958647 CNV deletion 24416366
nsv975466 CNV duplication 23825009

Variation tolerance for OVCH1-AS1 Gene

Gene Damage Index Score: 3.10; 51.01% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OVCH1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OVCH1-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for OVCH1-AS1 Gene

Disorders for OVCH1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for OVCH1-AS1 Gene - From: LNC

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for OVCH1-AS1

genes like me logo Genes that share disorders with OVCH1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for OVCH1-AS1 Gene

Publications for OVCH1-AS1 Gene

  1. Long non-coding RNA expression profiles of hepatitis C virus-related dysplasia and hepatocellular carcinoma. (PMID: 26540467) Zhang H … Zhao H (Oncotarget 2015) 74
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

No data available for Mastermind for OVCH1-AS1 Gene

Products for OVCH1-AS1 Gene

Sources for OVCH1-AS1 Gene