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OVCH1-AS1 Gene(RNA Gene)

OVCH1 Antisense RNA 1

GCID:
GC12P029389
GIFtS:
13
Genes Participants
UDN Logo

Aliases for OVCH1-AS1 Gene

Subcategory (RNA class) for OVCH1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OVCH1-AS1 Gene

  • OVCH1 Antisense RNA 1 2 3 5

External Ids for OVCH1-AS1 Gene

Previous GeneCards Identifiers for OVCH1-AS1 Gene

  • GC12P029543

Summaries for OVCH1-AS1 Gene

GeneCards Summary for OVCH1-AS1 Gene

OVCH1-AS1 (OVCH1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for OVCH1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OVCH1-AS1 Gene

Genomics for OVCH1-AS1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for OVCH1-AS1 Gene

Promoters and enhancers for OVCH1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12I029389 Promoter/Enhancer 1.1 Ensembl ENCODE 550.8 +1.3 1311 2.4 SOX5 FOXA2 SOX6 FOXA3 HLF CEBPB FOSL1 SCRT2 CEBPA ZBTB33 OVCH1-AS1 LOC100506606 PIR60715
GH12I029428 Enhancer 1 Ensembl ENCODE 0.3 +39.3 39312 1.2 PKNOX1 BATF RAD21 YY1 GTF3C2 ZNF766 POLR3A ZNF143 FOS IKZF2 ERGIC2 OVCH1 LOC100506606 PIR60715 OVCH1-AS1 GC12P029484
GH12I029402 Enhancer 0.4 FANTOM5 0.4 +13.0 12968 0.3 ZNF366 ZNF512 OVCH1-AS1 PIR60715
GH12I029435 Enhancer 0.6 Ensembl 0.2 +46.3 46288 0.8 ATF4 MTA1 L3MBTL2 POLR2A CEBPB CEBPG REST ATF7 ATF2 ERGIC2 PIR60715 GC12P029484 OVCH1-AS1 OVCH1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OVCH1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for OVCH1-AS1 Gene

Genomic Locations for OVCH1-AS1 Gene
chr12:29,389,289-29,487,488
(GRCh38/hg38)
Size:
98,200 bases
Orientation:
Plus strand
chr12:29,542,227-29,640,421
(GRCh37/hg19)

Genomic View for OVCH1-AS1 Gene

Genes around OVCH1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OVCH1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OVCH1-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for OVCH1-AS1 Gene

Proteins for OVCH1-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for OVCH1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OVCH1-AS1 Gene

Domains & Families for OVCH1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OVCH1-AS1 Gene

Function for OVCH1-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for OVCH1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OVCH1-AS1 Gene

Localization for OVCH1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OVCH1-AS1 Gene

Pathways & Interactions for OVCH1-AS1 Gene

SuperPathways for OVCH1-AS1 Gene

PathCards logo More details on SuperPathways for OVCH1-AS1
No Data Available

Interacting Proteins for OVCH1-AS1 Gene

Gene Ontology (GO) - Biological Process for OVCH1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OVCH1-AS1 Gene

Drugs & Compounds for OVCH1-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for OVCH1-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for OVCH1-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OVCH1-AS1 Gene

No ASD Table

Relevant External Links for OVCH1-AS1 Gene

GeneLoc Exon Structure for
OVCH1-AS1
ECgene alternative splicing isoforms for
OVCH1-AS1

Expression for OVCH1-AS1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OVCH1-AS1 Gene

mRNA expression in normal human tissues for OVCH1-AS1 Gene
mRNA expression by GTEx for OVCH1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OVCH1-AS1 Gene

This gene is overexpressed in Testis (x17.3) and Whole Blood (x4.6).
genes like me logo Genes that share expression patterns with OVCH1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OVCH1-AS1 Gene

Orthologs for OVCH1-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for OVCH1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia OVCH1-AS1 34
  • 99 (a)
 OneToOne
Species where no ortholog for OVCH1-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OVCH1-AS1 Gene

ENSEMBL:
Gene Tree for OVCH1-AS1 (if available)
TreeFam:
Gene Tree for OVCH1-AS1 (if available)

Paralogs for OVCH1-AS1 Gene

No data available for Paralogs for OVCH1-AS1 Gene

Variants for OVCH1-AS1 Gene

Sequence variations from dbSNP and Humsavar for OVCH1-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000029632 -- 29,438,942(+) G/C intron_variant
rs1000034747 -- 29,439,147(+) T/G intron_variant
rs1000059719 -- 29,396,353(+) AGCA/A intron_variant
rs1000066924 -- 29,414,967(+) C/T intron_variant
rs1000112246 -- 29,482,355(+) G/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for OVCH1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv975466 CNV duplication 23825009
nsv958647 CNV deletion 24416366
nsv820607 CNV deletion 20802225
nsv557917 CNV gain 21841781
nsv557916 CNV loss 21841781
nsv557915 CNV loss 21841781
nsv527807 CNV loss 19592680
nsv525100 CNV loss 19592680
nsv469190 CNV gain 19166990
nsv1070519 CNV deletion 25765185
nsv1069655 CNV deletion 25765185
esv997212 CNV deletion 20482838
esv6212 CNV loss 19470904
esv3580214 CNV loss 25503493
esv3574 CNV loss 18987735
esv3548964 CNV deletion 23714750
esv3436761 CNV duplication 20981092
esv3253162 CNV deletion 24192839
esv29688 CNV gain 19812545
esv2745687 CNV deletion 23290073
esv2458414 CNV deletion 19546169
esv2354786 CNV deletion 18987734
esv1371683 CNV deletion 17803354
dgv788n106 CNV deletion 24896259

Variation tolerance for OVCH1-AS1 Gene

Gene Damage Index Score: 3.10; 51.01% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OVCH1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OVCH1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OVCH1-AS1 Gene

Disorders for OVCH1-AS1 Gene

Additional Disease Information for OVCH1-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for OVCH1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OVCH1-AS1 Gene

Publications for OVCH1-AS1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for OVCH1-AS1 Gene

Sources for OVCH1-AS1 Gene

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