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Aliases for OVCH1-AS1 Gene
Subcategory (RNA class) for OVCH1-AS1 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for OVCH1-AS1 Gene
External Ids for OVCH1-AS1 Gene
- HGNC: 44484
- Entrez Gene: 101055625
- Ensembl: ENSG00000257599
Previous GeneCards Identifiers for OVCH1-AS1 Gene
- GC12P029543
Summaries for OVCH1-AS1 Gene
GeneCards Summary for OVCH1-AS1 Gene
OVCH1-AS1 (OVCH1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with OVCH1-AS1 include Hepatocellular Carcinoma.
Additional gene information for OVCH1-AS1 Gene
- Monarch Initiative
- Search for OVCH1-AS1 at DataMed
- Search for OVCH1-AS1 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OVCH1-AS1 Gene
Genomics for OVCH1-AS1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for OVCH1-AS1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J029389 | Promoter/Enhancer | 1.2 | EPDnew Ensembl ENCODE | 600.7 | +1.7 | 1720 | 3.6 | SOX6 CEBPA SCRT2 CEBPB FOXA2 FOSL1 FOXP1 SPI1 POLR2A ZBTB33 | OVCH1-AS1 ENSG00000257176 FAR2 ERGIC2 piR-43105-107 OVCH1 | |
| GH12J029428 | Enhancer | 1 | Ensembl ENCODE | 0.3 | +39.6 | 39625 | 4.2 | CTCF TEAD4 JUND STAT3 PKNOX1 REST RAD21 SP1 TRIM22 GTF2E2 | ERGIC2 OVCH1 ENSG00000257176 piR-37670 OVCH1-AS1 RF00017-1119 | |
| GH12J029402 | Enhancer | 0.4 | FANTOM5 | 0.4 | +13.0 | 12976 | 0.3 | ZNF512 ZNF366 | piR-43105-107 OVCH1-AS1 ERGIC2 OVCH1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around OVCH1-AS1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for OVCH1-AS1 Gene
Genomic Locations for OVCH1-AS1 Gene
- chr12:29,389,281-29,487,488
- (GRCh38/hg38)
- Size:
- 98,208 bases
- Orientation:
- Plus strand
- chr12:29,542,227-29,640,421
- (GRCh37/hg19)
- Size:
- 98,195 bases
- Orientation:
- Plus strand
Genomic View for OVCH1-AS1 Gene
Genes around OVCH1-AS1 on UCSC Golden Path with GeneCards custom track
OVCH1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12p11.22 by HGNC
- 12p11.22 by Entrez Gene
- 12p11.22 by Ensembl
OVCH1-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for OVCH1-AS1 Gene
Proteins for OVCH1-AS1 Gene
Post-translational modifications for OVCH1-AS1 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for OVCH1-AS1
- Origene Custom Protein Services for OVCH1-AS1
No data available for DME Specific Peptides for OVCH1-AS1 Gene
Domains & Families for OVCH1-AS1 Gene
Gene Families for OVCH1-AS1 Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for OVCH1-AS1 Gene
Function for OVCH1-AS1 Gene
Phenotypes From GWAS Catalog for OVCH1-AS1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for OVCH1-AS1
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OVCH1-AS1 Gene
Localization for OVCH1-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OVCH1-AS1 Gene
Transcripts for OVCH1-AS1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for OVCH1-AS1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000077BBB4_9606 | lncRNA | 743 | 4 |
Ensembl: ENST00000549411 (view in UCSC) , LncBook: HSALNT0187197, LNCipedia: OVCH1-AS1:6, NONCODE: NONHSAT027492.2, |
| URS000075E73F_9606 | lncRNA | 999 | 3 |
RefSeq: NR_073172, LNCipedia: OVCH1-AS1:2, NONCODE: NONHSAT162001.1, |
| URS0000BC99B7_9606 | lncRNA | 5529 | 2 |
Ensembl: ENST00000641955 (view in UCSC) , LNCipedia: OVCH1-AS1:7, |
| URS000075CEFB_9606 | lncRNA | 5291 | 2 |
HGNC: 44311, RefSeq: NR_027451, |
| URS000075D789_9606 | lncRNA | 1287 | 2 |
HGNC: 44484, RefSeq: NR_073170, |
OVCH1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for OVCH1-AS1 Gene
- 7 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for OVCH1-AS1
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for OVCH1-AS1 Gene
- GeneLoc Exon Structure for
- OVCH1-AS1
Expression for OVCH1-AS1 Gene
mRNA differential expression in normal tissues according to GTEx for OVCH1-AS1 Gene
This gene is overexpressed in Testis (x17.3) and Whole Blood (x4.6).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for OVCH1-AS1
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OVCH1-AS1 Gene
Orthologs for OVCH1-AS1 Gene
This gene was present in the common ancestor of human and chimp.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | OVCH1-AS1 31 |
|
OneToOne |
- Species where no ortholog for OVCH1-AS1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- Cow (Bos Taurus)
- Dog (Canis familiaris)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Lizard (Anolis carolinensis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Mouse (Mus musculus)
- Oppossum (Monodelphis domestica)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Platypus (Ornithorhynchus anatinus)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
- Zebrafish (Danio rerio)
Paralogs for OVCH1-AS1 Gene
No data available for Paralogs for OVCH1-AS1 Gene
Variants for OVCH1-AS1 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv788n106 | CNV | deletion | 24896259 |
| esv1371683 | CNV | deletion | 17803354 |
| esv2354786 | CNV | deletion | 18987734 |
| esv2458414 | CNV | deletion | 19546169 |
| esv2745687 | CNV | deletion | 23290073 |
| esv29688 | CNV | gain | 19812545 |
| esv3253162 | CNV | deletion | 24192839 |
| esv3436761 | CNV | duplication | 20981092 |
| esv3548964 | CNV | deletion | 23714750 |
| esv3574 | CNV | loss | 18987735 |
| esv3580214 | CNV | loss | 25503493 |
| esv6212 | CNV | loss | 19470904 |
| esv997212 | CNV | deletion | 20482838 |
| nsv1069655 | CNV | deletion | 25765185 |
| nsv1070519 | CNV | deletion | 25765185 |
| nsv469190 | CNV | gain | 19166990 |
| nsv525100 | CNV | loss | 19592680 |
| nsv527807 | CNV | loss | 19592680 |
| nsv557915 | CNV | loss | 21841781 |
| nsv557916 | CNV | loss | 21841781 |
| nsv557917 | CNV | gain | 21841781 |
| nsv820607 | CNV | deletion | 20802225 |
| nsv958647 | CNV | deletion | 24416366 |
| nsv975466 | CNV | duplication | 23825009 |
Gene Damage Index Score:
3.10;
51.01% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for OVCH1-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- OVCH1-AS1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for OVCH1-AS1 Gene
Disorders for OVCH1-AS1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| hepatocellular carcinoma |
|
Search OVCH1-AS1 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for OVCH1-AS1
No data available for UniProtKB/Swiss-Prot and Genatlas for OVCH1-AS1 Gene
Publications for OVCH1-AS1 Gene
- Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3
No data available for Mastermind for OVCH1-AS1 Gene
Products for OVCH1-AS1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for OVCH1-AS1
- Origene Custom Protein Services for OVCH1-AS1
- Browse OriGene Inhibitory RNA Products For OVCH1-AS1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for OVCH1-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For OVCH1-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for OVCH1-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for OVCH1-AS1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for OVCH1-AS1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for OVCH1-AS1
Sources for OVCH1-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB