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Aliases for OTX2-AS1 Gene

Subcategory (RNA class) for OTX2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for OTX2-AS1 Gene

  • OTX2 Antisense RNA 1 (Head To Head) 2 3 5
  • OTX2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Otx2 Opposite Strand Transcript 1 3
  • OTX2 Antisense RNA 1 2
  • OTX2OS1 3

External Ids for OTX2-AS1 Gene

Previous GeneCards Identifiers for OTX2-AS1 Gene

  • GC14P057280

Summaries for OTX2-AS1 Gene

GeneCards Summary for OTX2-AS1 Gene

OTX2-AS1 (OTX2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for OTX2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OTX2-AS1 Gene

Genomics for OTX2-AS1 Gene

GeneHancer (GH) Regulatory Elements for OTX2-AS1 Gene

Promoters and enhancers for OTX2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I056811 Enhancer 0.4 ENCODE 550.8 -1.2 -1175 0.1 SUZ12 CTBP2 EZH2 OTX2 OTX2-AS1
GH14I056812 Enhancer 0.4 ENCODE 550.8 -1.8 -1805 0.2 CTBP2 EZH2 OTX2 OTX2-AS1
GH14I056814 Enhancer 0.4 ENCODE 550.8 -1.0 -965 0.1 SUZ12 CTBP2 EZH2 OTX2 OTX2-AS1
GH14I056810 Promoter 0.8 EPDnew 0.8 -2.7 -2684 0.1 PKNOX1 POLR2A SUZ12 SIN3A EZH2 OTX2 OTX2-AS1
GH14I056853 Enhancer 1.1 VISTA ENCODE 0.3 +42.6 42591 3.7 KLF1 FOXA2 SIN3A E2F1 ZBTB48 PATZ1 PRDM10 EZH2 ZBTB20 RFX1 GC14P056857 GC14P056825 ENSG00000258776 OTX2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OTX2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for OTX2-AS1 Gene

Genomic Locations for OTX2-AS1 Gene
338,995 bases
Plus strand

Genomic View for OTX2-AS1 Gene

Genes around OTX2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OTX2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OTX2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OTX2-AS1 Gene

Proteins for OTX2-AS1 Gene

Post-translational modifications for OTX2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OTX2-AS1 Gene

Domains & Families for OTX2-AS1 Gene

Gene Families for OTX2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with OTX2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OTX2-AS1 Gene

Function for OTX2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OTX2-AS1 Gene

Localization for OTX2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OTX2-AS1 Gene

Pathways & Interactions for OTX2-AS1 Gene

SuperPathways for OTX2-AS1 Gene

No Data Available

Interacting Proteins for OTX2-AS1 Gene

Gene Ontology (GO) - Biological Process for OTX2-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for OTX2-AS1 Gene

Drugs & Compounds for OTX2-AS1 Gene

No Compound Related Data Available

Transcripts for OTX2-AS1 Gene

mRNA/cDNA for OTX2-AS1 Gene

(6) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OTX2-AS1 Gene

OTX2 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for OTX2-AS1 Gene

No ASD Table

Relevant External Links for OTX2-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for OTX2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OTX2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OTX2-AS1 Gene

This gene is overexpressed in Brain - Substantia nigra (x19.2), Brain - Hypothalamus (x8.1), Brain - Hippocampus (x6.4), and Brain - Caudate (basal ganglia) (x4.6).

SOURCE GeneReport for Unigene cluster for OTX2-AS1 Gene:

genes like me logo Genes that share expression patterns with OTX2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OTX2-AS1 Gene

Orthologs for OTX2-AS1 Gene

Evolution for OTX2-AS1 Gene

Gene Tree for OTX2-AS1 (if available)
Gene Tree for OTX2-AS1 (if available)

No data available for Orthologs for OTX2-AS1 Gene

Paralogs for OTX2-AS1 Gene

No data available for Paralogs for OTX2-AS1 Gene

Variants for OTX2-AS1 Gene

Sequence variations from dbSNP and Humsavar for OTX2-AS1 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000008045 -- 56,840,983(+) G/A intron_variant
rs1000021257 -- 56,866,184(+) G/C intron_variant
rs1000028561 -- 56,835,272(+) C/G intron_variant
rs1000046912 -- 56,918,101(+) G/A intron_variant
rs1000066722 -- 56,887,968(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for OTX2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3581211 CNV loss 25503493
esv3581212 CNV loss 25503493
nsv1048136 CNV gain 25217958
nsv1288 CNV deletion 18451855
nsv507751 OTHER sequence alteration 20534489
nsv510381 OTHER sequence alteration 20534489
nsv519759 CNV loss 19592680
nsv564877 CNV gain 21841781

Additional Variant Information for OTX2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OTX2-AS1 Gene

Disorders for OTX2-AS1 Gene

Additional Disease Information for OTX2-AS1

No disorders were found for OTX2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OTX2-AS1 Gene

Publications for OTX2-AS1 Gene

  1. Natural antisense transcripts associated with genes involved in eye development. (PMID: 15703187) Alfano G … Banfi S (Human molecular genetics 2005) 2 3 58
  2. Genetic risk variants for metabolic traits in Arab populations. (PMID: 28106113) Hebbar P … Alsmadi O (Scientific reports 2017) 3 58
  3. Methylation status of NEUROG2 and NID2 improves the diagnosis of stage I NSCLC. (PMID: 22741015) Geng J … Yu J (Oncology letters 2012) 3 58
  4. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M … Kato S (Investigative ophthalmology & visual science 2011) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for OTX2-AS1 Gene

Sources for OTX2-AS1 Gene

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