Aliases for OTUD6B-AS1 Gene

Subcategory (RNA class) for OTUD6B-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for OTUD6B-AS1 Gene

  • OTUD6B Antisense RNA 1 (Head To Head) 2 3 5
  • OTUD6B-AS1 2 5 165
  • GS1-251I9.4 2 3
  • NONHSAG050725.2 91
  • HSALNG0066885 164

External Ids for OTUD6B-AS1 Gene

Summaries for OTUD6B-AS1 Gene

GeneCards Summary for OTUD6B-AS1 Gene

OTUD6B-AS1 (OTUD6B Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for OTUD6B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OTUD6B-AS1 Gene

Genomics for OTUD6B-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for OTUD6B-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OTUD6B-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for OTUD6B-AS1 Gene

Genomic Locations for OTUD6B-AS1 Gene
chr8:91,048,659-91,070,583
(GRCh38/hg38)
Size:
21,925 bases
Orientation:
Minus strand
chr8:92,072,137-92,082,417
(GRCh37/hg19)
Size:
10,281 bases
Orientation:
Minus strand

Genomic View for OTUD6B-AS1 Gene

Genes around OTUD6B-AS1 on UCSC Golden Path with GeneCards custom track
OTUD6B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
OTUD6B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OTUD6B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OTUD6B-AS1 Gene

Proteins for OTUD6B-AS1 Gene

Post-translational modifications for OTUD6B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OTUD6B-AS1 Gene

Domains & Families for OTUD6B-AS1 Gene

Gene Families for OTUD6B-AS1 Gene

genes like me logo Genes that share domains with OTUD6B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for OTUD6B-AS1 Gene

Function for OTUD6B-AS1 Gene

Phenotypes From GWAS Catalog for OTUD6B-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OTUD6B-AS1 Gene

Localization for OTUD6B-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OTUD6B-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OTUD6B-AS1 Gene

Pathways & Interactions for OTUD6B-AS1 Gene

PathCards logo

SuperPathways for OTUD6B-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for OTUD6B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for OTUD6B-AS1 Gene

Drugs & Compounds for OTUD6B-AS1 Gene

No Compound Related Data Available

Transcripts for OTUD6B-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for OTUD6B-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D817_9606 lncRNA 4344 2

HGNC: 50466,

RefSeq: NR_110438,

URS000011811E_9606 lncRNA 2171 2

Ensembl: ENST00000524003 (view in UCSC) ,

LNCipedia: OTUD6B-AS1:2,

URS0000EECED6_9606 lncRNA 5405 1

Ensembl: ENST00000659792 (view in UCSC) ,

URS0000EEAF6A_9606 lncRNA 4892 1

Ensembl: ENST00000522817 (view in UCSC) ,

URS0000EF0A6A_9606 lncRNA 2377 1

Ensembl: ENST00000657110 (view in UCSC) ,

OTUD6B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for OTUD6B-AS1 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for OTUD6B-AS1 Gene

No ASD Table

Relevant External Links for OTUD6B-AS1 Gene

GeneLoc Exon Structure for
OTUD6B-AS1

Expression for OTUD6B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OTUD6B-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for OTUD6B-AS1

genes like me logo Genes that share expression patterns with OTUD6B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OTUD6B-AS1 Gene

Orthologs for OTUD6B-AS1 Gene

Evolution for OTUD6B-AS1 Gene

ENSEMBL:
Gene Tree for OTUD6B-AS1 (if available)
TreeFam:
Gene Tree for OTUD6B-AS1 (if available)

No data available for Orthologs for OTUD6B-AS1 Gene

Paralogs for OTUD6B-AS1 Gene

No data available for Paralogs for OTUD6B-AS1 Gene

Variants for OTUD6B-AS1 Gene

Additional dbSNP identifiers (rs#s) for OTUD6B-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for OTUD6B-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1005323 CNV insertion 20482838
esv2759629 CNV loss 17122850
nsv6300 CNV insertion 18451855
nsv831390 CNV gain 17160897

Additional Variant Information for OTUD6B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OTUD6B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for OTUD6B-AS1 Gene

Disorders for OTUD6B-AS1 Gene

No disorders were found for OTUD6B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OTUD6B-AS1 Gene

Publications for OTUD6B-AS1 Gene

  1. OTUD6B-AS1 Might Be a Novel Regulator of Apoptosis in Systemic Sclerosis. (PMID: 31156645) Takata M … Distler O (Frontiers in immunology 2019) 2 3
  2. Genome-wide meta-analysis identifies new susceptibility loci for migraine. (PMID: 23793025) Anttila V … Palotie A (Nature genetics 2013) 3
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for OTUD6B-AS1 Gene

Sources for OTUD6B-AS1 Gene