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Aliases for OSTM1-AS1 Gene

Subcategory (RNA class) for OSTM1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OSTM1-AS1 Gene

  • OSTM1 Antisense RNA 1 2 3 5
  • OSTM1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for OSTM1-AS1 Gene

Previous GeneCards Identifiers for OSTM1-AS1 Gene

  • GC06P108446

Summaries for OSTM1-AS1 Gene

GeneCards Summary for OSTM1-AS1 Gene

OSTM1-AS1 (OSTM1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for OSTM1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OSTM1-AS1 Gene

Genomics for OSTM1-AS1 Gene

GeneHancer (GH) Regulatory Elements for OSTM1-AS1 Gene

Promoters and enhancers for OSTM1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I108895 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 4.7 +773.0 772955 2.7 FOXA2 KLF17 ZNF76 RAD21 YY1 ZEB1 KLF7 FOS RUNX3 SP3 ARMC2 RNU6-653P ARMC2-AS1 OSTM1-AS1 FOXO3 CD164 ATP5MFP2 RPS12P13
GH06I108127 Enhancer 0.9 ENCODE 0.8 +4.5 4507 0.2 PKNOX1 FOXA2 MLX NEUROD1 FEZF1 ZNF2 YY1 FOS RXRA REST NR2E1 OSTM1 OSTM1-AS1 GC06M108139
GH06I108113 Enhancer 1.4 VISTA UCNEbase Ensembl 0.4 -8.1 -8141 3.7 ZSCAN4 SIN3A YBX1 ZNF2 ZNF48 RAD21 RFX5 ZNF335 ZNF366 SMARCA5 NR2E1 OSTM1 OSTM1-AS1 ENSG00000238490
GH06I108133 Enhancer 1.1 Ensembl ENCODE 0.4 +10.6 10620 1.5 PKNOX1 SIN3A ZNF2 ZNF48 GLIS2 ZNF213 KLF7 ATF7 TSHZ1 KAT8 NR2E1 OSTM1 SEC63 GC06M108139 OSTM1-AS1
GH06I108117 Enhancer 1 UCNEbase Ensembl 0.4 -5.2 -5241 1.6 L3MBTL2 SUZ12 SIN3A SP1 POLR2A CTBP2 EZH2 MGA NR2E1 OSTM1 SEC63 OSTM1-AS1 ENSG00000238490
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OSTM1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for OSTM1-AS1 Gene

Genomic Locations for OSTM1-AS1 Gene
chr6:108,123,515-108,159,392
(GRCh38/hg38)
Size:
35,878 bases
Orientation:
Plus strand
chr6:108,444,719-108,480,599
(GRCh37/hg19)

Genomic View for OSTM1-AS1 Gene

Genes around OSTM1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OSTM1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OSTM1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OSTM1-AS1 Gene

Proteins for OSTM1-AS1 Gene

Post-translational modifications for OSTM1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OSTM1-AS1 Gene

Domains & Families for OSTM1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OSTM1-AS1 Gene

Function for OSTM1-AS1 Gene

Phenotypes From GWAS Catalog for OSTM1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OSTM1-AS1 Gene

Localization for OSTM1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OSTM1-AS1 Gene

Pathways & Interactions for OSTM1-AS1 Gene

SuperPathways for OSTM1-AS1 Gene

No Data Available

Interacting Proteins for OSTM1-AS1 Gene

Gene Ontology (GO) - Biological Process for OSTM1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OSTM1-AS1 Gene

Drugs & Compounds for OSTM1-AS1 Gene

No Compound Related Data Available

Transcripts for OSTM1-AS1 Gene

mRNA/cDNA for OSTM1-AS1 Gene

(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OSTM1-AS1 Gene

OSTM1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OSTM1-AS1 Gene

No ASD Table

Relevant External Links for OSTM1-AS1 Gene

GeneLoc Exon Structure for
OSTM1-AS1
ECgene alternative splicing isoforms for
OSTM1-AS1

Expression for OSTM1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OSTM1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OSTM1-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x9.8), Brain - Caudate (basal ganglia) (x9.3), Brain - Amygdala (x6.7), Brain - Putamen (basal ganglia) (x5.8), Brain - Frontal Cortex (BA9) (x5.0), Brain - Cortex (x5.0), Brain - Anterior cingulate cortex (BA24) (x4.1), and Brain - Hippocampus (x4.0).

SOURCE GeneReport for Unigene cluster for OSTM1-AS1 Gene:

Hs.221513
genes like me logo Genes that share expression patterns with OSTM1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OSTM1-AS1 Gene

Orthologs for OSTM1-AS1 Gene

Evolution for OSTM1-AS1 Gene

ENSEMBL:
Gene Tree for OSTM1-AS1 (if available)
TreeFam:
Gene Tree for OSTM1-AS1 (if available)

No data available for Orthologs for OSTM1-AS1 Gene

Paralogs for OSTM1-AS1 Gene

No data available for Paralogs for OSTM1-AS1 Gene

Variants for OSTM1-AS1 Gene

Sequence variations from dbSNP and Humsavar for OSTM1-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000112304 -- 108,157,130(+) C/G non_coding_transcript_variant
rs1000127976 -- 108,137,359(+) G/A intron_variant
rs1000139098 -- 108,148,819(+) T/C intron_variant
rs1000183513 -- 108,126,198(+) C/G intron_variant
rs1000184515 -- 108,158,240(+) T/C non_coding_transcript_variant

Additional Variant Information for OSTM1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OSTM1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OSTM1-AS1 Gene

Disorders for OSTM1-AS1 Gene

Additional Disease Information for OSTM1-AS1

No disorders were found for OSTM1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OSTM1-AS1 Gene

Publications for OSTM1-AS1 Gene

  1. Novel vertebrate genes and putative regulatory elements identified at kidney disease and NR2E1/fierce loci. (PMID: 12079282) Abrahams BS … Venkatesh B (Genomics 2002) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58
  4. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3 58

Products for OSTM1-AS1 Gene

Sources for OSTM1-AS1 Gene

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