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Aliases for OSTCP1 Gene

Aliases for OSTCP1 Gene

  • Oligosaccharyltransferase Complex Subunit Pseudogene 1 2 3 5
  • Oligosaccharyltransferase Complex Subunit-Like 2
  • DC2 Protein-Like 2
  • OSTCL 3
  • DC2L 3

External Ids for OSTCP1 Gene

Previous HGNC Symbols for OSTCP1 Gene

  • OSTCL

Previous GeneCards Identifiers for OSTCP1 Gene

  • GC06M159265

Summaries for OSTCP1 Gene

GeneCards Summary for OSTCP1 Gene

OSTCP1 (Oligosaccharyltransferase Complex Subunit Pseudogene 1) is a Pseudogene.

Additional gene information for OSTCP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OSTCP1 Gene

Genomics for OSTCP1 Gene

GeneHancer (GH) Regulatory Elements for OSTCP1 Gene

Promoters and enhancers for OSTCP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I158847 Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.8 +4.5 4510 11.2 CLOCK MLX YBX1 FEZF1 SLC30A9 E2F8 ZNF548 MCM3 SP3 MEF2D WTAP DYNLT1 EZR SYTL3 LOC442272 RNU6-293P TCP1 TATDN2P2 MRPL18 TAGAP
GH06I158860 Enhancer 0.9 ENCODE dbSUPER 0.8 -3.2 -3233 1.1 MEIS2 ATF1 FOSL1 ATF7 ZNF639 SOX6 L3MBTL2 CBFA2T3 MNT ATF2 EZR OSTCP1 C6orf99
GH06I158866 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 0.4 -11.3 -11267 4.6 HDGF PKNOX1 CLOCK SMAD1 ARNT SIN3A ZNF2 IRF4 POLR2B ZNF766 C6orf99 WTAP DYNLT1 EZR GC06M158870 GC06M158871 OSTCP1
GH06I158861 Enhancer 0.7 ENCODE dbSUPER 0.8 -4.5 -4523 1.1 GATA3 ZSCAN5C CEBPB DACH1 ELF1 ZBTB33 SETDB1 DYNLT1 OSTCP1 C6orf99
GH06I158863 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.4 -6.6 -6605 2.3 CTCF SP1 MCM3 ZSCAN4 MCM5 ZBTB33 ZNF24 WTAP DYNLT1 TATDN2P2 EZR C6orf99 OSTCP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OSTCP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for OSTCP1 Gene

Genomic Locations for OSTCP1 Gene
chr6:158,841,117-158,857,632
(GRCh38/hg38)
Size:
16,516 bases
Orientation:
Minus strand
chr6:159,262,149-159,278,664
(GRCh37/hg19)

Genomic View for OSTCP1 Gene

Genes around OSTCP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OSTCP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OSTCP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OSTCP1 Gene

Proteins for OSTCP1 Gene

Post-translational modifications for OSTCP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OSTCP1 Gene

Domains & Families for OSTCP1 Gene

Suggested Antigen Peptide Sequences for OSTCP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for OSTCP1 Gene

Function for OSTCP1 Gene

Phenotypes for OSTCP1 Gene

genes like me logo Genes that share phenotypes with OSTCP1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OSTCP1 Gene

Localization for OSTCP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OSTCP1 Gene

Pathways & Interactions for OSTCP1 Gene

SuperPathways for OSTCP1 Gene

No Data Available

Interacting Proteins for OSTCP1 Gene

Gene Ontology (GO) - Biological Process for OSTCP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OSTCP1 Gene

Drugs & Compounds for OSTCP1 Gene

No Compound Related Data Available

Transcripts for OSTCP1 Gene

mRNA/cDNA for OSTCP1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OSTCP1 Gene

Oligosaccharyltransferase complex subunit pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OSTCP1 Gene

No ASD Table

Relevant External Links for OSTCP1 Gene

GeneLoc Exon Structure for
OSTCP1
ECgene alternative splicing isoforms for
OSTCP1

Expression for OSTCP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OSTCP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of OSTCP1 Gene:

OSTCP1

SOURCE GeneReport for Unigene cluster for OSTCP1 Gene:

Hs.487035
genes like me logo Genes that share expression patterns with OSTCP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OSTCP1 Gene

Orthologs for OSTCP1 Gene

Evolution for OSTCP1 Gene

ENSEMBL:
Gene Tree for OSTCP1 (if available)
TreeFam:
Gene Tree for OSTCP1 (if available)

No data available for Orthologs for OSTCP1 Gene

Paralogs for OSTCP1 Gene

No data available for Paralogs for OSTCP1 Gene

Variants for OSTCP1 Gene

Sequence variations from dbSNP and Humsavar for OSTCP1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000055567 -- 158,840,808(-) G/A downstream_transcript_variant
rs1000779505 -- 158,858,645(-) C/T upstream_transcript_variant
rs1000853640 -- 158,852,550(-) G/A intron_variant
rs1000860054 -- 158,842,752(-) G/A intron_variant
rs1001024327 -- 158,846,858(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for OSTCP1 Gene

Variant ID Type Subtype PubMed ID
nsv969461 CNV duplication 23825009
esv3327787 CNV duplication 20981092

Additional Variant Information for OSTCP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OSTCP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OSTCP1 Gene

Disorders for OSTCP1 Gene

Additional Disease Information for OSTCP1

No disorders were found for OSTCP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OSTCP1 Gene

Publications for OSTCP1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  3. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 58
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3 58
  5. Systematic identification of pathological lamin A interactors. (PMID: 24623722) Dittmer TA … Misteli T (Molecular biology of the cell 2014) 3

Products for OSTCP1 Gene

Sources for OSTCP1 Gene

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