OSM Gene (Protein Coding)

Oncostatin M

GC22M030262
GIFtS:
43
This gene encodes a member of the leukemia inhibitory factor/oncostatin-M (LIF/OSM) family of proteins. The encoded preproprotein is proteolytically processed to generate the mature protein. This protein is a secreted cytokine and growth regulator that inhibits the proliferation of a number of tumor cell lines. This protein also regulates the production of other cytokines, incl... See more...

Aliases for OSM Gene

Aliases for OSM Gene

  • Oncostatin M 2 3 5
  • Oncostatin-M 3 4
  • MGC20461 2
  • OSM 5

External Ids for OSM Gene

Previous GeneCards Identifiers for OSM Gene

  • GC22M027354
  • GC22M028983
  • GC22M030658
  • GC22M013620

Summaries for OSM Gene

Entrez Gene Summary for OSM Gene

  • This gene encodes a member of the leukemia inhibitory factor/oncostatin-M (LIF/OSM) family of proteins. The encoded preproprotein is proteolytically processed to generate the mature protein. This protein is a secreted cytokine and growth regulator that inhibits the proliferation of a number of tumor cell lines. This protein also regulates the production of other cytokines, including interleukin 6, granulocyte-colony stimulating factor and granulocyte-macrophage colony stimulating factor in endothelial cells. This gene and the related gene, leukemia inhibitory factor, also present on chromosome 22, may have resulted from the duplication of a common ancestral gene. Alternative splicing results in multiple transcript variants, at least one of which encodes an isoform that is proteolytically processed. [provided by RefSeq, Jan 2016]

GeneCards Summary for OSM Gene

OSM (Oncostatin M) is a Protein Coding gene. Diseases associated with OSM include Plasmacytoma and Cerebral Meningioma. Among its related pathways are G-protein signaling Ras family GTPases in kinase cascades (scheme) and PEDF Induced Signaling. Gene Ontology (GO) annotations related to this gene include cytokine activity and oncostatin-M receptor binding.

UniProtKB/Swiss-Prot Summary for OSM Gene

  • Growth regulator. Inhibits the proliferation of a number of tumor cell lines. Stimulates proliferation of AIDS-KS cells. It regulates cytokine production, including IL-6, G-CSF and GM-CSF from endothelial cells. Uses both type I OSM receptor (heterodimers composed of LIFR and IL6ST) and type II OSM receptor (heterodimers composed of OSMR and IL6ST). Involved in the maturation of fetal hepatocytes, thereby promoting liver development and regeneration (By similarity).

Gene Wiki entry for OSM Gene

Additional gene information for OSM Gene

No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OSM Gene

Genomics for OSM Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for OSM Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OSM on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for OSM

Top Transcription factor binding sites by QIAGEN in the OSM gene promoter:
  • AP-1
  • ATF-2
  • c-Jun
  • c-Myc
  • Max
  • STAT1

Genomic Locations for OSM Gene

Genomic Locations for OSM Gene
chr22:30,262,829-30,266,851
(GRCh38/hg38)
Size:
4,023 bases
Orientation:
Minus strand
chr22:30,658,818-30,662,829
(GRCh37/hg19)
Size:
4,012 bases
Orientation:
Minus strand

Genomic View for OSM Gene

Genes around OSM on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OSM Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OSM Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for OSM Gene

Proteins for OSM Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for OSM Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P13725-ONCM_HUMAN
    Recommended name:
    Oncostatin-M
    Protein Accession:
    P13725
    Secondary Accessions:
    • Q6FHP8
    • Q9UCP6

    Protein attributes for OSM Gene

    Size:
    252 amino acids
    Molecular mass:
    28484 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for OSM Gene

neXtProt entry for OSM Gene

Protein Expression for OSM Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for OSM Gene

  • Propeptide processing is not important for receptor binding activity but may be important growth-inhibitory activity.
  • Glycosylation at Asn100 and Asn217
  • Modification sites at PhosphoSitePlus

Other Protein References for OSM Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for OSM Gene

Domains & Families for OSM Gene

Gene Families for OSM Gene

HGNC:
Human Protein Atlas (HPA):
  • Cancer-related genes
  • Plasma proteins
  • Predicted intracellular proteins
  • Predicted secreted proteins

Protein Domains for OSM Gene

InterPro:
Blocks:
  • Oncostatin
ProtoNet:

Suggested Antigen Peptide Sequences for OSM Gene

GenScript: Design optimal peptide antigens:
  • Oncostatin M (B5BUQ7_HUMAN)
  • Oncostatin-M (ONCM_HUMAN)

Graphical View of Domain Structure for InterPro Entry

P13725

UniProtKB/Swiss-Prot:

ONCM_HUMAN :
  • Belongs to the LIF/OSM family.
Family:
  • Belongs to the LIF/OSM family.
genes like me logo Genes that share domains with OSM: view

Function for OSM Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for OSM Gene

UniProtKB/Swiss-Prot Function:
Growth regulator. Inhibits the proliferation of a number of tumor cell lines. Stimulates proliferation of AIDS-KS cells. It regulates cytokine production, including IL-6, G-CSF and GM-CSF from endothelial cells. Uses both type I OSM receptor (heterodimers composed of LIFR and IL6ST) and type II OSM receptor (heterodimers composed of OSMR and IL6ST). Involved in the maturation of fetal hepatocytes, thereby promoting liver development and regeneration (By similarity).
GENATLAS Biochemistry:
oncostatin M,interleukin-6,28.5kDa,interleukin 6 subfamily member,expressed in T cells and PMA treated monocytes

LifeMap Function Summary for OSM Gene

During embryonic development, OSM as signaling molecule is secreted from the following cells
It affects the following cells:
OSM as growth factor is involved in stem cell differentiation protocols towards the derivation of the following cells:

Phenotypes From GWAS Catalog for OSM Gene

Gene Ontology (GO) - Molecular Function for OSM Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005125 cytokine activity IEA,IDA 8999038
GO:0005147 oncostatin-M receptor binding IEA,IPI 8999038
GO:0005515 protein binding IPI 16051226
GO:0008083 growth factor activity IDA 8999038
genes like me logo Genes that share ontologies with OSM: view
genes like me logo Genes that share phenotypes with OSM: view

Animal Models for OSM Gene

MGI Knock Outs for OSM:
  • Osm Osm<tm1Ymo>
  • Osm Osm<tm1b(KOMP)Wtsi>

Animal Model Products

  • Taconic Biosciences Mouse Models for OSM

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OSM

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for OSM Gene

Localization for OSM Gene

Subcellular locations from UniProtKB/Swiss-Prot for OSM Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OSM gene
Compartment Confidence
extracellular 5
plasma membrane 3
cytoskeleton 2
mitochondrion 2
nucleus 2
endoplasmic reticulum 2
cytosol 2
lysosome 2
peroxisome 1
endosome 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for OSM Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA,TAS --
GO:0005615 extracellular space TAS,IEA --
genes like me logo Genes that share ontologies with OSM: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OSM Gene

Pathways & Interactions for OSM Gene

PathCards logo

SuperPathways for OSM Gene

SuperPathway Contained pathways
1 PEDF Induced Signaling
MIF Mediated Glucocorticoid Regulation
.94
MIF Regulation of Innate Immune Cells
.94
PEDF Induced Signaling
.73
all-trans-Retinoic Acid Signaling in Brain
.71
RAR-Gamma-RXR-Alpha Degradation
.62
IL-6 Pathway
.61
STAT3 Pathway
.47
Endothelin-1 Signaling Pathway
.46
Cytokine-cytokine receptor interaction
.43
2 ERK Signaling
ERK Signaling
.61
Rho Family GTPases
.61
MAPK Signaling
.58
Molecular Mechanisms of Cancer
.51
3 Akt Signaling
Akt Signaling
.60
p38 Signaling
.60
4 PAK Pathway
Antioxidant Action of Vitamin-C
.56
PAK Pathway
.56
5 Cytokine Signaling in Immune system
Cytokine Signaling in Immune system
.69
Signaling by Interleukins
.69
genes like me logo Genes that share pathways with OSM: view

Pathways by source for OSM Gene

2 BioSystems pathways for OSM Gene
4 GeneGo (Thomson Reuters) pathways for OSM Gene
  • Development_Thrombopoetin signaling via JAK-STAT pathway
  • Immune response IL-3 activation and signaling pathway
  • Immune response Oncostatin M signaling via MAPK in human cells
  • Immune response_Oncostatin M signaling via JAK-Stat in human cells
17 Qiagen pathways for OSM Gene
  • Akt Signaling
  • all-trans-Retinoic Acid Signaling in Brain
  • Antioxidant Action of Vitamin-C
  • Endothelin-1 Signaling Pathway
  • ERK Signaling

SIGNOR curated interactions for OSM Gene

Activates:

Gene Ontology (GO) - Biological Process for OSM Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002675 positive regulation of acute inflammatory response IC 8999038
GO:0006955 immune response IEA --
GO:0007275 multicellular organism development TAS 1717982
GO:0008284 positive regulation of cell proliferation IDA 8999038
GO:0008285 negative regulation of cell proliferation TAS 1717982
genes like me logo Genes that share ontologies with OSM: view

Drugs & Compounds for OSM Gene

Products:

  1. Drug

(25) Drugs for OSM Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(31) Additional Compounds for OSM Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with OSM: view

Transcripts for OSM Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for OSM Gene

2 REFSEQ mRNAs :
7 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OSM

Alternative Splicing Database (ASD) splice patterns (SP) for OSM Gene

No ASD Table

Relevant External Links for OSM Gene

GeneLoc Exon Structure for
OSM

Expression for OSM Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OSM Gene

mRNA expression in normal human tissues for OSM Gene
mRNA expression by GTEx for OSM GenemRNA expression by BioGPS for OSM Gene

mRNA differential expression in normal tissues according to GTEx for OSM Gene

This gene is overexpressed in Whole Blood (x37.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for OSM Gene



Transcriptomic regulation report from SPP (The Signaling Pathways Project) for OSM

SOURCE GeneReport for Unigene cluster for OSM Gene:

Hs.248156

Evidence on tissue expression from TISSUES for OSM Gene

  • Blood(4.5)
  • Lung(4.4)
  • Bone marrow(3.2)
  • Nervous system(2.8)
  • Liver(2.7)
  • Lymph node(2.7)
  • Skin(2.5)
  • Intestine(2.5)
  • Spleen(2.4)
  • Heart(2.4)
  • Muscle(2.3)
  • Bone(2.3)
  • Kidney(2.2)
  • Pancreas(2)
  • Adrenal gland(2)
genes like me logo Genes that share expression patterns with OSM: view

No data available for Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for OSM Gene

Orthologs for OSM Gene

This gene was present in the common ancestor of mammals.

Orthologs for OSM Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia OSM 30 31
  • 99.6 (n)
 OneToOne
Dog
(Canis familiaris)
 Mammalia OSM 30 31
  • 77.07 (n)
 OneToOne
Cow
(Bos Taurus)
 Mammalia OSM 30 31
  • 69.34 (n)
 OneToOne
Rat
(Rattus norvegicus)
 Mammalia Osm 30
  • 66.19 (n)
Mouse
(Mus musculus)
 Mammalia Osm 30 17 31
  • 64.75 (n)
 OneToOne
Species where no ortholog for OSM was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for OSM Gene

ENSEMBL:
Gene Tree for OSM (if available)
TreeFam:
Gene Tree for OSM (if available)
Aminode:
Evolutionary constrained regions (ECRs) for OSM: view image

Paralogs for OSM Gene

No data available for Paralogs for OSM Gene

Variants for OSM Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for OSM Gene

SNP ID Clinical significance and condition Chr 22 pos Variation AA Info Type
rs5763919 - p.Thr9Met

Additional dbSNP identifiers (rs#s) for OSM Gene

Structural Variations from Database of Genomic Variants (DGV) for OSM Gene

Variant ID Type Subtype PubMed ID
nsv1062388 CNV gain 25217958
nsv1110864 OTHER inversion 24896259
nsv588885 CNV loss 21841781
nsv829171 CNV loss 20364138
nsv834174 CNV gain+loss 17160897

Variation tolerance for OSM Gene

Residual Variation Intolerance Score: 76.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.71; 32.53% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OSM Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OSM

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OSM Gene

Disorders for OSM Gene

MalaCards: The human disease database

(14) MalaCards diseases for OSM Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
plasmacytoma
  • myeloma - solitary
cerebral meningioma
  • meningioma of cerebrum
kaposi sarcoma
  • kaposi sarcoma, susceptibility to
chronic eosinophilic leukemia
  • pdgfra-associated chronic eosinophilic leukemia
arthritis
  • inflammatory disorder of joint
- elite association - COSMIC cancer census association via MalaCards
Search OSM in MalaCards View complete list of genes associated with diseases

Additional Disease Information for OSM

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
Tumor Gene Database
(TGDB)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
genes like me logo Genes that share disorders with OSM: view

No data available for UniProtKB/Swiss-Prot and Genatlas for OSM Gene

Publications for OSM Gene

  1. Oncostatin M is a member of a cytokine family that includes leukemia-inhibitory factor, granulocyte colony-stimulating factor, and interleukin 6. (PMID: 1717982) Rose TM … Bruce AG (Proceedings of the National Academy of Sciences of the United States of America 1991) 2 3 4 23
  2. Dual oncostatin M (OSM) receptors. Cloning and characterization of an alternative signaling subunit conferring OSM-specific receptor activation. (PMID: 8999038) Mosley B … Cosman D (The Journal of biological chemistry 1996) 3 4 23
  3. Oncostatin M as a potent mitogen for AIDS-Kaposi's sarcoma-derived cells. (PMID: 1542793) Miles SA … Linsley PS (Science (New York, N.Y.) 1992) 3 4 23
  4. Gingival crevicular fluid levels of oncostatin M in periodontal conditions. (PMID: 20189410) Thorat Manojkumar S … Raju A (Cytokine 2010) 3 23
  5. S100A7 (psoriasin) is induced by the proinflammatory cytokines oncostatin-M and interleukin-6 in human breast cancer. (PMID: 20101226) West NR … Watson PH (Oncogene 2010) 3 23

ExternalLinks

View latest publications for OSM gene in Mastermind

Products for OSM Gene

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