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Aliases for OR7D2 Gene

Aliases for OR7D2 Gene

  • Olfactory Receptor Family 7 Subfamily D Member 2 2 3 5
  • Olfactory Receptor OR19-10 3 4
  • Olfactory Receptor 19-4 3 4
  • HTPCRH03 3 4
  • OR19-4 3 4
  • Olfactory Receptor, Family 7, Subfamily D, Member 2 2
  • Olfactory Receptor 7D2 3
  • OR19-10 3

External Ids for OR7D2 Gene

Previous GeneCards Identifiers for OR7D2 Gene

  • GC19U990187
  • GC19P009298

Summaries for OR7D2 Gene

Entrez Gene Summary for OR7D2 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR7D2 Gene

OR7D2 (Olfactory Receptor Family 7 Subfamily D Member 2) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. Gene Ontology (GO) annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR7D4.

UniProtKB/Swiss-Prot for OR7D2 Gene

  • Odorant receptor.

Gene Wiki entry for OR7D2 Gene

Additional gene information for OR7D2 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR7D2 Gene

Genomics for OR7D2 Gene

GeneHancer (GH) Regulatory Elements for OR7D2 Gene

Promoters and enhancers for OR7D2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I009185 Promoter 0.5 EPDnew 550.4 +6.6 6572 0.1 GC19M009190 GC19M009189 GC19M009188 OR7D2 ELOCP29
GH19I009139 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 53.7 -38.3 -38287 1.8 PKNOX1 SMAD1 ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 ZNF207 ZNF143 ZNF317 OR7D2 ZNF558 ZNF266 ZNF699 FBXL12 HNRNPM ZNF559 ZNF561 LOC100419831
GH19I008239 Enhancer 1.5 Ensembl ENCODE dbSUPER 9.8 -938.6 -938555 2 HDGF PKNOX1 CLOCK SMAD1 FOXA2 MLX ARNT ARID4B ZNF2 YY1 ENSG00000271717 ZNF558 HNRNPM ELAVL1 ZNF317 ENSG00000269300 XAB2 ZNF414 CERS4 ARHGEF18
GH19I009917 Enhancer 1.1 Ensembl ENCODE 9.8 +738.5 738504 0.2 HDAC1 ELF3 PKNOX1 RB1 ARNT ZNF76 ZBTB40 ETS1 ZNF335 GATA2 LOC100128428 COL5A3 RDH8 QTRT1 C19orf66 OR7D2 GC19P009927 OLFM2 PIR54152
GH19I009074 Enhancer 1.2 Ensembl ENCODE 8.3 -103.4 -103442 1.7 PKNOX1 ARNT ZNF2 ZNF766 FOS REST SMARCB1 ZNF592 SMARCA4 GLIS1 MUC16 ZNF414 LOC100419831 ZNF559 ZNF558 HNRNPM ZNF266 OR7G1 ZNF699 ZNF121
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OR7D2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the OR7D2 gene promoter:

Genomic Locations for OR7D2 Gene

Genomic Locations for OR7D2 Gene
chr19:9,178,979-9,188,817
(GRCh38/hg38)
Size:
9,839 bases
Orientation:
Plus strand
chr19:9,296,270-9,299,493
(GRCh37/hg19)

Genomic View for OR7D2 Gene

Genes around OR7D2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR7D2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR7D2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR7D2 Gene

Proteins for OR7D2 Gene

  • Protein details for OR7D2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96RA2-OR7D2_HUMAN
    Recommended name:
    Olfactory receptor 7D2
    Protein Accession:
    Q96RA2
    Secondary Accessions:
    • Q6IFJ7
    • Q8N133

    Protein attributes for OR7D2 Gene

    Size:
    312 amino acids
    Molecular mass:
    34747 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR7D2 Gene

Post-translational modifications for OR7D2 Gene

  • Glycosylation at isoforms=5
  • Modification sites at PhosphoSitePlus

Other Protein References for OR7D2 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR7D2 Gene

Domains & Families for OR7D2 Gene

Gene Families for OR7D2 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OR7D2 Gene

Suggested Antigen Peptide Sequences for OR7D2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96RA2

UniProtKB/Swiss-Prot:

OR7D2_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR7D2: view

Function for OR7D2 Gene

Molecular function for OR7D2 Gene

GENATLAS Biochemistry:
olfactory receptor,family 7,subfamily D,member 2,G protein coupled receptor superfamily
UniProtKB/Swiss-Prot Function:
Odorant receptor.

Phenotypes From GWAS Catalog for OR7D2 Gene

Gene Ontology (GO) - Molecular Function for OR7D2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
genes like me logo Genes that share ontologies with OR7D2: view

miRNA for OR7D2 Gene

miRTarBase miRNAs that target OR7D2

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for OR7D2 Gene

Localization for OR7D2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR7D2 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR7D2 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR7D2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR7D2: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR7D2 Gene

Pathways & Interactions for OR7D2 Gene

genes like me logo Genes that share pathways with OR7D2: view

Pathways by source for OR7D2 Gene

Interacting Proteins for OR7D2 Gene

Gene Ontology (GO) - Biological Process for OR7D2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IDA 12175488
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway TAS --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
genes like me logo Genes that share ontologies with OR7D2: view

No data available for SIGNOR curated interactions for OR7D2 Gene

Drugs & Compounds for OR7D2 Gene

No Compound Related Data Available

Transcripts for OR7D2 Gene

mRNA/cDNA for OR7D2 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OR7D2 Gene

Olfactory receptor, family 7, subfamily D, member 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR7D2 Gene

No ASD Table

Relevant External Links for OR7D2 Gene

GeneLoc Exon Structure for
OR7D2
ECgene alternative splicing isoforms for
OR7D2

Expression for OR7D2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR7D2 Gene

mRNA differential expression in normal tissues according to GTEx for OR7D2 Gene

This gene is overexpressed in Testis (x7.7).

NURSA nuclear receptor signaling pathways regulating expression of OR7D2 Gene:

OR7D2

SOURCE GeneReport for Unigene cluster for OR7D2 Gene:

Hs.531755
genes like me logo Genes that share expression patterns with OR7D2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR7D2 Gene

Orthologs for OR7D2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR7D2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC468710 33
  • 99.04 (n)
OR7D2 34
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia OR7D2 33 34
  • 87.39 (n)
dog
(Canis familiaris)
Mammalia LOC611376 33
  • 87.29 (n)
-- 34
  • 63 (a)
ManyToMany
rat
(Rattus norvegicus)
Mammalia Olr1193 33
  • 68.42 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 64 (a)
ManyToMany
-- 34
  • 64 (a)
ManyToMany
-- 34
  • 64 (a)
ManyToMany
OPOR17 34
  • 64 (a)
ManyToMany
OPOR20 34
  • 63 (a)
ManyToMany
OPOR9 34
  • 63 (a)
ManyToMany
-- 34
  • 62 (a)
ManyToMany
-- 34
  • 61 (a)
ManyToMany
-- 34
  • 61 (a)
ManyToMany
-- 34
  • 61 (a)
ManyToMany
OPOR21 34
  • 61 (a)
ManyToMany
OPOR24 34
  • 61 (a)
ManyToMany
-- 34
  • 60 (a)
ManyToMany
OPOR142 34
  • 60 (a)
ManyToMany
OPOR13 34
  • 59 (a)
ManyToMany
-- 34
  • 58 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Olfr871 34
  • 62 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 58 (a)
ManyToMany
-- 34
  • 55 (a)
ManyToMany
-- 34
  • 55 (a)
ManyToMany
-- 34
  • 54 (a)
ManyToMany
Species where no ortholog for OR7D2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR7D2 Gene

ENSEMBL:
Gene Tree for OR7D2 (if available)
TreeFam:
Gene Tree for OR7D2 (if available)

Paralogs for OR7D2 Gene

Paralogs for OR7D2 Gene

(456) SIMAP similar genes for OR7D2 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for OR7D2 Gene

genes like me logo Genes that share paralogs with OR7D2: view

Variants for OR7D2 Gene

Sequence variations from dbSNP and Humsavar for OR7D2 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1001056235 -- 9,188,041(+) A/G 3_prime_UTR_variant
rs1001125083 -- 9,188,035(+) G/A 3_prime_UTR_variant
rs1001929661 -- 9,187,346(+) C/A 3_prime_UTR_variant
rs1001957551 -- 9,187,608(+) G/A 3_prime_UTR_variant
rs1002149704 -- 9,183,641(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for OR7D2 Gene

Variant ID Type Subtype PubMed ID
esv2762024 CNV gain 21179565
nsv2411 CNV deletion 18451855
nsv509720 CNV insertion 20534489
nsv516657 CNV gain 19592680
nsv523472 CNV loss 19592680

Variation tolerance for OR7D2 Gene

Residual Variation Intolerance Score: 74.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.60; 45.08% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OR7D2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR7D2

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR7D2 Gene

Disorders for OR7D2 Gene

Additional Disease Information for OR7D2

No disorders were found for OR7D2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR7D2 Gene

Publications for OR7D2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 4 58
  3. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T … Shamir R (Genomics 2002) 3 4 58
  4. A highly conserved novel family of mammalian developmental transcription factors related to Drosophila grainyhead. (PMID: 12175488) Wilanowski T … Jane SM (Mechanisms of development 2002) 3 58
  5. Expression of members of the putative olfactory receptor gene family in mammalian germ cells. (PMID: 1370859) Parmentier M … Perret J (Nature 1992) 3 58

Products for OR7D2 Gene

Sources for OR7D2 Gene

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