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Aliases for OR6N1 Gene

Aliases for OR6N1 Gene

  • Olfactory Receptor Family 6 Subfamily N Member 1 2 3 5
  • Olfactory Receptor, Family 6, Subfamily N, Member 1 2
  • Olfactory Receptor OR1-22 3
  • Olfactory Receptor 6N1 3
  • OR1-22 3

External Ids for OR6N1 Gene

Previous GeneCards Identifiers for OR6N1 Gene

  • GC01U990386
  • GC01M155632
  • GC01M155548
  • GC01M157002
  • GC01M158735

Summaries for OR6N1 Gene

Entrez Gene Summary for OR6N1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR6N1 Gene

OR6N1 (Olfactory Receptor Family 6 Subfamily N Member 1) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. Gene Ontology (GO) annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR6N2.

UniProtKB/Swiss-Prot for OR6N1 Gene

  • Odorant receptor.

Gene Wiki entry for OR6N1 Gene

Additional gene information for OR6N1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR6N1 Gene

Genomics for OR6N1 Gene

GeneHancer (GH) Regulatory Elements for OR6N1 Gene

Promoters and enhancers for OR6N1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I159141 Enhancer 0.8 FANTOM5 Ensembl 15.9 -369.8 -369794 0.8 MXI1 SP1 JUND ATF3 POLR3A ZBTB48 POLR2A FOS PRDM10 ZBTB17 GC01M159143 TRR-TCT4-1 OR6K3 OR6N1 FCER1A CADM3 ACKR1 CADM3-AS1 OR6N2 OR10J5
GH01I158800 Enhancer 1 FANTOM5 Ensembl dbSUPER 11.2 -30.1 -30106 4.2 MAFG REST ZBTB40 ZNF592 ZNF316 MAFF EMSY MAFK MNDA OR6N1 OR6N2 PYHIN1 IFI16 OR10AA1P OR2AQ1P
GH01I158808 Enhancer 0.8 FANTOM5 Ensembl dbSUPER 10.4 -37.7 -37706 2.6 CEBPB OR10AA1P MNDA OR6N2 OR6N1 OR6K2 PYHIN1 IFI16
GH01I158793 Enhancer 0.5 dbSUPER 11.5 -23.4 -23436 4 CTCF ZNF143 REST RAD21 OR2AQ1P OR6N1 SPTA1 OR6K6 OR6K2 OR10X1 OR6N2
GH01I158654 Enhancer 0.5 Ensembl ENCODE 10 +117.3 117256 0.8 REST SPTA1 OR6K2 OR6N1 OR6P1 OR6K6 OR10Z1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OR6N1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the OR6N1 gene promoter:

Genomic Locations for OR6N1 Gene

Genomic Locations for OR6N1 Gene
chr1:158,747,814-158,772,195
(GRCh38/hg38)
Size:
24,382 bases
Orientation:
Minus strand
chr1:158,735,466-158,736,492
(GRCh37/hg19)

Genomic View for OR6N1 Gene

Genes around OR6N1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR6N1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR6N1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR6N1 Gene

Proteins for OR6N1 Gene

  • Protein details for OR6N1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGY5-OR6N1_HUMAN
    Recommended name:
    Olfactory receptor 6N1
    Protein Accession:
    Q8NGY5
    Secondary Accessions:
    • Q5VUU8
    • Q96R35

    Protein attributes for OR6N1 Gene

    Size:
    312 amino acids
    Molecular mass:
    34869 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR6N1 Gene

Post-translational modifications for OR6N1 Gene

  • Glycosylation at isoforms=5
  • Modification sites at PhosphoSitePlus

Other Protein References for OR6N1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR6N1 Gene

Domains & Families for OR6N1 Gene

Gene Families for OR6N1 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OR6N1 Gene

Suggested Antigen Peptide Sequences for OR6N1 Gene

Graphical View of Domain Structure for InterPro Entry

Q8NGY5

UniProtKB/Swiss-Prot:

OR6N1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR6N1: view

Function for OR6N1 Gene

Molecular function for OR6N1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Phenotypes From GWAS Catalog for OR6N1 Gene

Gene Ontology (GO) - Molecular Function for OR6N1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
genes like me logo Genes that share ontologies with OR6N1: view

Phenotypes for OR6N1 Gene

genes like me logo Genes that share phenotypes with OR6N1: view

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR6N1 Gene

Localization for OR6N1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR6N1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR6N1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR6N1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR6N1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR6N1 Gene

Pathways & Interactions for OR6N1 Gene

genes like me logo Genes that share pathways with OR6N1: view

Pathways by source for OR6N1 Gene

Interacting Proteins for OR6N1 Gene

Gene Ontology (GO) - Biological Process for OR6N1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway TAS --
GO:0007608 sensory perception of smell IBA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR6N1: view

No data available for SIGNOR curated interactions for OR6N1 Gene

Drugs & Compounds for OR6N1 Gene

No Compound Related Data Available

Transcripts for OR6N1 Gene

mRNA/cDNA for OR6N1 Gene

(4) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR6N1 Gene

No ASD Table

Relevant External Links for OR6N1 Gene

GeneLoc Exon Structure for
OR6N1
ECgene alternative splicing isoforms for
OR6N1

Expression for OR6N1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR6N1 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR6N1 Gene:

OR6N1

SOURCE GeneReport for Unigene cluster for OR6N1 Gene:

Hs.553592
genes like me logo Genes that share expression patterns with OR6N1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR6N1 Gene

Orthologs for OR6N1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for OR6N1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC469536 33
  • 99.25 (n)
OR6N1 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia OR16E08 34
  • 87 (a)
OneToOne
OR6N1 33
  • 84.52 (n)
cow
(Bos Taurus)
Mammalia OR6N1 33 34
  • 86.71 (n)
mouse
(Mus musculus)
Mammalia Or6n1 51 Olfr429 33 16 34
  • 85.32 (n)
oppossum
(Monodelphis domestica)
Mammalia OR6N1 34
  • 85 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Olr1589 33
  • 84.94 (n)
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 38 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100496592 33
  • 56.17 (n)
Species where no ortholog for OR6N1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR6N1 Gene

ENSEMBL:
Gene Tree for OR6N1 (if available)
TreeFam:
Gene Tree for OR6N1 (if available)

Paralogs for OR6N1 Gene

Paralogs for OR6N1 Gene

(459) SIMAP similar genes for OR6N1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with OR6N1: view

Variants for OR6N1 Gene

Sequence variations from dbSNP and Humsavar for OR6N1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000012808 -- 158,810,973(-) T/C/G genic_upstream_transcript_variant, intron_variant
rs1000020171 -- 158,831,854(-) G/A genic_upstream_transcript_variant, intron_variant
rs1000026725 -- 158,784,357(-) G/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000110928 -- 158,799,147(-) A/G genic_upstream_transcript_variant, intron_variant
rs1000140086 -- 158,838,491(-) T/C genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for OR6N1 Gene

Variant ID Type Subtype PubMed ID
dgv589n54 CNV loss 21841781
nsv1002401 CNV loss 25217958
nsv824975 CNV loss 20364138
nsv997861 CNV loss 25217958

Variation tolerance for OR6N1 Gene

Residual Variation Intolerance Score: 94% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.56; 82.46% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OR6N1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR6N1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR6N1 Gene

Disorders for OR6N1 Gene

Additional Disease Information for OR6N1

No disorders were found for OR6N1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR6N1 Gene

Publications for OR6N1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 58
  2. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T … Shamir R (Genomics 2002) 3 4 58
  3. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for OR6N1 Gene

Sources for OR6N1 Gene

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