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Aliases for OR6C1 Gene

Aliases for OR6C1 Gene

  • Olfactory Receptor Family 6 Subfamily C Member 1 2 3 5
  • OST267 3 4
  • Olfactory Receptor, Family 6, Subfamily C, Member 1 2
  • Olfactory Receptor 6C1 3

External Ids for OR6C1 Gene

Previous GeneCards Identifiers for OR6C1 Gene

  • GC00U990606
  • GC12P054001
  • GC12P054002
  • GC12P055715

Summaries for OR6C1 Gene

Entrez Gene Summary for OR6C1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR6C1 Gene

OR6C1 (Olfactory Receptor Family 6 Subfamily C Member 1) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. Gene Ontology (GO) annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR6C3.

UniProtKB/Swiss-Prot for OR6C1 Gene

  • Odorant receptor.

Gene Wiki entry for OR6C1 Gene

Additional gene information for OR6C1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR6C1 Gene

Genomics for OR6C1 Gene

GeneHancer (GH) Regulatory Elements for OR6C1 Gene

Promoters and enhancers for OR6C1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J055629 Enhancer 0.4 FANTOM5 dbSUPER 1.3 +314.9 314939 0 MMP19 OR6C4 OR10P1 OR6C65 ZC3H10 OR6C74 OR9K2 OR6C3 OR6C2 OR6C6
GH12J055320 Enhancer 0.2 ENCODE 0.4 +6.2 6168 0.6 GC12M055305 GC12P055322 OR6C1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OR6C1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the OR6C1 gene promoter:
  • RORalpha2
  • GR-alpha
  • GR
  • Ik-1
  • FAC1
  • ITF-2
  • Tal-1beta
  • PPAR-gamma2
  • PPAR-gamma1
  • GATA-1

Genomic Locations for OR6C1 Gene

Genomic Locations for OR6C1 Gene
8,022 bases
Plus strand
1,063 bases
Plus strand

Genomic View for OR6C1 Gene

Genes around OR6C1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR6C1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR6C1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR6C1 Gene

Proteins for OR6C1 Gene

  • Protein details for OR6C1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Olfactory receptor 6C1
    Protein Accession:
    Secondary Accessions:
    • B2RNM0

    Protein attributes for OR6C1 Gene

    312 amino acids
    Molecular mass:
    35660 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR6C1 Gene

Post-translational modifications for OR6C1 Gene

  • Glycosylation at isoforms=3
  • Modification sites at PhosphoSitePlus

Other Protein References for OR6C1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR6C1 Gene

Domains & Families for OR6C1 Gene

Gene Families for OR6C1 Gene

Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OR6C1 Gene

Suggested Antigen Peptide Sequences for OR6C1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the G-protein coupled receptor 1 family.
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR6C1: view

Function for OR6C1 Gene

Molecular function for OR6C1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR6C1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR6C1: view
genes like me logo Genes that share phenotypes with OR6C1: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR6C1 Gene

Localization for OR6C1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR6C1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR6C1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR6C1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR6C1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR6C1 Gene

Pathways & Interactions for OR6C1 Gene

genes like me logo Genes that share pathways with OR6C1: view

Pathways by source for OR6C1 Gene

Interacting Proteins for OR6C1 Gene

Gene Ontology (GO) - Biological Process for OR6C1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IEA --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR6C1: view

No data available for SIGNOR curated interactions for OR6C1 Gene

Drugs & Compounds for OR6C1 Gene

No Compound Related Data Available

Transcripts for OR6C1 Gene

mRNA/cDNA for OR6C1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OR6C1 Gene

Olfactory receptor, family 6, subfamily C, member 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR6C1 Gene

No ASD Table

Relevant External Links for OR6C1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for OR6C1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR6C1 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR6C1 Gene:


SOURCE GeneReport for Unigene cluster for OR6C1 Gene:

genes like me logo Genes that share expression patterns with OR6C1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR6C1 Gene

Orthologs for OR6C1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR6C1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia LOC746860 33
  • 98.82 (n)
OR6C1 34
  • 97 (a)
(Bos Taurus)
Mammalia OR6C1 33
  • 88.74 (n)
-- 34
  • 86 (a)
-- 34
  • 80 (a)
-- 34
  • 80 (a)
-- 34
  • 78 (a)
(Canis familiaris)
Mammalia LOC100683479 33
  • 85.85 (n)
-- 34
  • 82 (a)
-- 34
  • 81 (a)
(Mus musculus)
Mammalia Or6c1b 51 Olfr786 34
  • 84 (a)
Or6c1 51 Olfr802 16 34 33
  • 83.82 (n)
(Rattus norvegicus)
Mammalia Olr964 33
  • 82.63 (n)
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 65 (a)
-- 34
  • 63 (a)
-- 34
  • 63 (a)
-- 34
  • 62 (a)
-- 34
  • 62 (a)
-- 34
  • 62 (a)
-- 34
  • 62 (a)
-- 34
  • 61 (a)
-- 34
  • 56 (a)
(Monodelphis domestica)
Mammalia OR6C1 34
  • 64 (a)
Species where no ortholog for OR6C1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR6C1 Gene

Gene Tree for OR6C1 (if available)
Gene Tree for OR6C1 (if available)
Evolutionary constrained regions (ECRs) for OR6C1: view image

Paralogs for OR6C1 Gene

Paralogs for OR6C1 Gene

(455) SIMAP similar genes for OR6C1 Gene using alignment to 1 proteins:

  • OR6C1_HUMAN Pseudogenes for OR6C1 Gene

genes like me logo Genes that share paralogs with OR6C1: view

Variants for OR6C1 Gene

Sequence variations from dbSNP and Humsavar for OR6C1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000340147 -- 55,320,166(+) C/T upstream_transcript_variant
rs1001104142 -- 55,321,798(+) T/A downstream_transcript_variant
rs1001107840 -- 55,321,782(+) T/A downstream_transcript_variant
rs1001136711 -- 55,322,010(+) AAAAAAAAA/AAAAAAAA/AAAAAAAAAA downstream_transcript_variant
rs1002425148 -- 55,320,799(+) T/G coding_sequence_variant, stop_gained

Structural Variations from Database of Genomic Variants (DGV) for OR6C1 Gene

Variant ID Type Subtype PubMed ID
esv2761740 CNV loss 21179565
esv3629571 CNV loss 21293372
nsv1050720 CNV loss 25217958
nsv438211 CNV loss 16468122
nsv559001 CNV loss 21841781
nsv559002 CNV loss 21841781
nsv718 CNV insertion 18451855
nsv82 CNV insertion 15895083
nsv826381 CNV loss 20364138

Variation tolerance for OR6C1 Gene

Residual Variation Intolerance Score: 61.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 12.32; 94.14% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OR6C1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR6C1 Gene

Disorders for OR6C1 Gene

Additional Disease Information for OR6C1

Genetic Association Database
Human Genome Epidemiology Navigator
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for OR6C1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR6C1 Gene

Publications for OR6C1 Gene

  1. An approach based on a genome-wide association study reveals candidate loci for narcolepsy. (PMID: 20677014) Shimada M … Tokunaga K (Human genetics 2010) 3 44 58
  2. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer SE … Baylor College of Medicine Human Genome Sequencing Center Sequence Production Team (Nature 2006) 3 4 58
  3. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T … Shamir R (Genomics 2002) 3 4 58
  4. Variants in the 1q21 risk region are associated with a visual endophenotype of autism and schizophrenia. (PMID: 24152035) Goodbourn PT … Mollon JD (Genes, brain, and behavior 2014) 3 58
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58

Products for OR6C1 Gene

Sources for OR6C1 Gene

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