OR5S1P Gene (Pseudogene)

Olfactory Receptor Family 5 Subfamily S Member 1 Pseudogene

GC02P240109
GIFtS:
7
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone rec... See more...

Aliases for OR5S1P Gene

Aliases for OR5S1P Gene

  • Olfactory Receptor Family 5 Subfamily S Member 1 Pseudogene 2 3 5
  • Olfactory Receptor, Family 5, Subfamily S, Member 1 Pseudogene 2
  • OR5S1P 5

External Ids for OR5S1P Gene

Previous GeneCards Identifiers for OR5S1P Gene

  • GC02U990286
  • GC02P241369
  • GC02P240265
  • GC02P240697
  • GC02P241048

Summaries for OR5S1P Gene

Entrez Gene Summary for OR5S1P Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR5S1P Gene

OR5S1P (Olfactory Receptor Family 5 Subfamily S Member 1 Pseudogene) is a Pseudogene.

Additional gene information for OR5S1P Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OR5S1P Gene

Genomics for OR5S1P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for OR5S1P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J240134 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +26.7 26699 3.2 TBP NR2C1 MNT SMAD5 ETS1 MBD2 POLR2A ELF1 ZIC2 THAP11 COPS9 lnc-OTOS-2 ANKMY1 CAPN10 OR6B3 NDUFA10 OR5S1P
GH02J240106 Enhancer 0.3 Ensembl 0.7 -3.0 -3001 0.2 FOS OR5S1P HSALNG0023551 COPS9 OR6B3
GH02J240113 Enhancer 0.2 Ensembl 0.7 +4.3 4299 0.4 COPS9 OR5S1P lnc-OTOS-2 OR6B3
GH02J240128 Enhancer 0.3 Ensembl 0.4 +19.6 19599 1 MNT OR6B2 NDUFA10 COPS9 lnc-OTOS-2 OR5S1P OR6B3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OR5S1P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for OR5S1P Gene

Latest Assembly
chr2:240,109,102-240,110,052
(GRCh38/hg38)
Size:
951 bases
Orientation:
Plus strand

Previous Assembly
chr2:241,048,519-241,049,466
(GRCh37/hg19 by Entrez Gene)
Size:
948 bases
Orientation:
Plus strand

chr2:241,048,519-241,049,469
(GRCh37/hg19 by Ensembl)
Size:
951 bases
Orientation:
Plus strand

Genomic View for OR5S1P Gene

Genes around OR5S1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR5S1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR5S1P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for OR5S1P Gene

Proteins for OR5S1P Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for OR5S1P Gene

No Post-translational modifications

Other Protein References for OR5S1P Gene

HORDE protein sequence:

No data available for DME Specific Peptides for OR5S1P Gene

Domains & Families for OR5S1P Gene

Gene Families for OR5S1P Gene

HGNC:
genes like me logo Genes that share domains with OR5S1P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for OR5S1P Gene

Function for OR5S1P Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for OR5S1P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR5S1P Gene

Localization for OR5S1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OR5S1P Gene

Pathways & Interactions for OR5S1P Gene

PathCards logo

SuperPathways for OR5S1P Gene

No Data Available

Gene Ontology (GO) - Biological Process for OR5S1P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for OR5S1P Gene

Drugs & Compounds for OR5S1P Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for OR5S1P Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

mRNA/cDNA for OR5S1P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OR5S1P Gene

No ASD Table

Relevant External Links for OR5S1P Gene

GeneLoc Exon Structure for
OR5S1P

Expression for OR5S1P Gene

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  1. Primer products for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OR5S1P Gene

mRNA expression in normal human tissues for OR5S1P Gene
mRNA expression by GTEx for OR5S1P Gene
genes like me logo Genes that share expression patterns with OR5S1P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR5S1P Gene

Orthologs for OR5S1P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for OR5S1P Gene

Organism Taxonomy Gene Similarity Type Details
Mouse
(Mus musculus)
 Mammalia Or5s2 46 Olfr12
  • chr1:92,619,908-92,620,906
Or5s3 46 Olfr1410
  • chr1:92,607,839-92,608,804
Or5s4 46 Olfr1411
  • chr1:92,596,521-92,597,489
Or9s23 46 Olfr1413
  • chr1:92,573,173-92,574,141
Or9s27 46 Olfr1412
  • chr1:92,588,257-92,589,294
Species where no ortholog for OR5S1P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for OR5S1P Gene

ENSEMBL:
Gene Tree for OR5S1P (if available)
TreeFam:
Gene Tree for OR5S1P (if available)

Paralogs for OR5S1P Gene

No data available for Paralogs for OR5S1P Gene

Variants for OR5S1P Gene

Additional Variant Information for OR5S1P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR5S1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OR5S1P Gene

Disorders for OR5S1P Gene

No disorders were found for OR5S1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for OR5S1P Gene

Publications for OR5S1P Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3

ExternalLinks

View latest publications for OR5S1P gene in Mastermind

Products for OR5S1P Gene

Sources for OR5S1P Gene