Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone rec... See more...

Aliases for OR5M1 Gene

Aliases for OR5M1 Gene

  • Olfactory Receptor Family 5 Subfamily M Member 1 2 3 5
  • OST050 2 3 4
  • Olfactory Receptor OR11-208 3 4
  • Olfactory Receptor 5M1 3 4
  • Olfactory Receptor, Family 5, Subfamily M, Member 1 2
  • Seven Transmembrane Helix Receptor 3
  • OR11-208 3
  • OR5M1 5

External Ids for OR5M1 Gene

Previous GeneCards Identifiers for OR5M1 Gene

  • GC11U990234
  • GC11M056087
  • GC11M056067
  • GC11M056136
  • GC11M056073
  • GC11M056380
  • GC11M056612
  • GC11M057223
  • GC11M057249
  • GC11M057148
  • GC11M059779
  • GC11M056787
  • GC11M061218
  • GC11M063683

Summaries for OR5M1 Gene

Entrez Gene Summary for OR5M1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR5M1 Gene

OR5M1 (Olfactory Receptor Family 5 Subfamily M Member 1) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory transduction. Gene Ontology (GO) annotations related to this gene include G protein-coupled receptor activity and odorant binding. An important paralog of this gene is OR5M10.

UniProtKB/Swiss-Prot Summary for OR5M1 Gene

Gene Wiki entry for OR5M1 Gene

No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OR5M1 Gene

Genomics for OR5M1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for OR5M1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J056895 Enhancer 0.2 FANTOM5 11.8 -280.9 -280942 0 OR5M10 OR5M9 OR5AP2 OR5M1 OR5M3 OR5AR1 OR5M8 OR8U3 OR5M11 FADS2B
GH11J056624 Enhancer 0.6 Ensembl 0.4 -10.2 -10226 0.2 SMARCA5 CTCF BMI1 ATF2 PKNOX1 ARID3A IKZF1 SPI1 MTA2 DPF2 piR-38351-075 OR5AR1 OR2AH1P OR5AM1P OR5M1 OR5AP2 HSALNG0084218 lnc-OR5AR1-1 lnc-OR9G1-1
GH11J056583 Enhancer 0.2 Ensembl 0.3 +31.2 31173 0.2 OR5M10 OR5M13P OR5M1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OR5M1 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for OR5M1

Top Transcription factor binding sites by QIAGEN in the OR5M1 gene promoter:
  • AREB6
  • CUTL1
  • E47
  • FOXO1
  • FOXO1a
  • GATA-2
  • HNF-1
  • HNF-1A
  • NCX
  • Pax-5

Genomic Locations for OR5M1 Gene

Latest Assembly
chr11:56,609,236-56,614,874
(GRCh38/hg38)
Size:
5,639 bases
Orientation:
Minus strand

Previous Assembly
chr11:56,376,712-56,382,350
(GRCh37/hg19 by Entrez Gene)
Size:
5,639 bases
Orientation:
Minus strand

chr11:56,380,031-56,380,978
(GRCh37/hg19 by Ensembl)
Size:
948 bases
Orientation:
Minus strand

Genomic View for OR5M1 Gene

Genes around OR5M1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR5M1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR5M1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR5M1 Gene

Proteins for OR5M1 Gene

  • Protein details for OR5M1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGP8-OR5M1_HUMAN
    Recommended name:
    Olfactory receptor 5M1
    Protein Accession:
    Q8NGP8
    Secondary Accessions:
    • Q6IF60
    • Q96RB6

    Protein attributes for OR5M1 Gene

    Size:
    315 amino acids
    Molecular mass:
    35608 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR5M1 Gene

Post-translational modifications for OR5M1 Gene

  • Glycosylation at Asn5
  • Modification sites at PhosphoSitePlus

Other Protein References for OR5M1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR5M1 Gene

Domains & Families for OR5M1 Gene

Gene Families for OR5M1 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OR5M1 Gene

InterPro:
Blocks:
  • Olfactory receptor signature

Suggested Antigen Peptide Sequences for OR5M1 Gene

GenScript: Design optimal peptide antigens:
  • Olfactory receptor OR11-208 (OR5M1_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q8NGP8

UniProtKB/Swiss-Prot:

OR5M1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR5M1: view

Function for OR5M1 Gene

Molecular function for OR5M1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Phenotypes From GWAS Catalog for OR5M1 Gene

Gene Ontology (GO) - Molecular Function for OR5M1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G protein-coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA 21873635
GO:0005549 odorant binding IBA 21873635
genes like me logo Genes that share ontologies with OR5M1: view
genes like me logo Genes that share phenotypes with OR5M1: view

Animal Models for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OR5M1

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR5M1 Gene

Localization for OR5M1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR5M1 Gene

Cell membrane. Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR5M1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR5M1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR5M1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR5M1 Gene

Pathways & Interactions for OR5M1 Gene

genes like me logo Genes that share pathways with OR5M1: view

Pathways by source for OR5M1 Gene

Interacting Proteins for OR5M1 Gene

Gene Ontology (GO) - Biological Process for OR5M1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G protein-coupled receptor signaling pathway IBA 21873635
GO:0007608 sensory perception of smell IBA 21873635
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR5M1: view

No data available for SIGNOR curated interactions for OR5M1 Gene

Drugs & Compounds for OR5M1 Gene

No Compound Related Data Available

Transcripts for OR5M1 Gene

mRNA/cDNA for OR5M1 Gene

1 REFSEQ mRNAs :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OR5M1

Alternative Splicing Database (ASD) splice patterns (SP) for OR5M1 Gene

No ASD Table

Relevant External Links for OR5M1 Gene

GeneLoc Exon Structure for
OR5M1

Expression for OR5M1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OR5M1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for OR5M1

SOURCE GeneReport for Unigene cluster for OR5M1 Gene:

Hs.553751
genes like me logo Genes that share expression patterns with OR5M1: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR5M1 Gene

Orthologs for OR5M1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR5M1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC466572 29
  • 99.05 (n)
OR5M1 30
  • 99 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia LOC100684561 29
  • 86.67 (n)
-- 30
  • 86 (a)
OneToMany
Cow
(Bos Taurus)
Mammalia OR5M10 29
  • 86.38 (n)
-- 30
  • 83 (a)
ManyToMany
-- 30
  • 82 (a)
ManyToMany
-- 30
  • 78 (a)
ManyToMany
Rat
(Rattus norvegicus)
Mammalia Olr466 29
  • 84.1 (n)
Mouse
(Mus musculus)
Mammalia Olfr1023 29 16 30
  • 82.74 (n)
ManyToMany
Olfr1022 30
  • 80 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia -- 30
  • 77 (a)
ManyToMany
-- 30
  • 74 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia -- 30
  • 65 (a)
OneToMany
Species where no ortholog for OR5M1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for OR5M1 Gene

ENSEMBL:
Gene Tree for OR5M1 (if available)
TreeFam:
Gene Tree for OR5M1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for OR5M1: view image
Alliance of Genome Resources:
Additional Orthologs for OR5M1

Paralogs for OR5M1 Gene

(447) SIMAP similar genes for OR5M1 Gene using alignment to 1 proteins:

  • OR5M1_HUMAN
genes like me logo Genes that share paralogs with OR5M1: view

Variants for OR5M1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for OR5M1 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
rs4939078 -- p.Ser282Thr

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for OR5M1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for OR5M1 Gene

Variant ID Type Subtype PubMed ID
nsv1037096 CNV loss 25217958
nsv555099 CNV loss 21841781
nsv975929 CNV duplication 23825009

Variation tolerance for OR5M1 Gene

Residual Variation Intolerance Score: 89.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 15.58; 97.23% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OR5M1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR5M1
Leiden Open Variation Database (LOVD)
OR5M1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR5M1 Gene

Disorders for OR5M1 Gene

Additional Disease Information for OR5M1

No disorders were found for OR5M1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR5M1 Gene

Publications for OR5M1 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 4
  2. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T … Shamir R (Genomics 2002) 3 4
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3

Products for OR5M1 Gene

Sources for OR5M1 Gene