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Aliases for OR52K2 Gene

Aliases for OR52K2 Gene

  • Olfactory Receptor Family 52 Subfamily K Member 2 2 3 5
  • Olfactory Receptor OR11-7 3 4
  • Olfactory Receptor, Family 52, Subfamily K, Member 2 2
  • Olfactory Receptor 52K2 3
  • OR11-7 3

External Ids for OR52K2 Gene

Previous GeneCards Identifiers for OR52K2 Gene

  • GC11U990491
  • GC11P004435
  • GC11P004427

Summaries for OR52K2 Gene

Entrez Gene Summary for OR52K2 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR52K2 Gene

OR52K2 (Olfactory Receptor Family 52 Subfamily K Member 2) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. Gene Ontology (GO) annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR52K1.

UniProtKB/Swiss-Prot for OR52K2 Gene

  • Odorant receptor.

Gene Wiki entry for OR52K2 Gene

Additional gene information for OR52K2 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR52K2 Gene

Genomics for OR52K2 Gene

GeneHancer (GH) Regulatory Elements for OR52K2 Gene

Promoters and enhancers for OR52K2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J004493 Enhancer 1.1 FANTOM5 Ensembl ENCODE 13.1 +44.0 43951 0.8 CTCF RB1 EBF1 RAD21 YY1 FOSL1 CTBP1 EED SMC3 ZNF143 OR52K2 OR52B4 TRIM21 OR51F1 OR52K1 OR52M2P
GH11J004145 Enhancer 0.7 ENCODE 8.4 -303.1 -303083 1.4 ATF1 TEAD4 NCOA2 CTBP1 BRD9 EGR1 CBFA2T2 SMARCA5 SMARCE1 L3MBTL2 OR52K2 RRM1 LOC100506082 OR55B1P RRM1-AS1
GH11J004392 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE 2.2 -55.8 -55815 1.7 HDGF PKNOX1 SIN3A DMAP1 IRF4 POLR2B GLIS2 ZNF143 ZFP91 ATF7 TRIM21 OR52K3P TRIM68 OR52K2 OR52B3P
GH11J004492 Enhancer 0.2 FANTOM5 15.4 +43.1 43121 0.1 OR52K2 OR51F1 OR52B4 OR51S1 OR51G2 OR51A4 OR52K1 C11orf40 OR52R1 OR51A7
GH11J004496 Enhancer 0.3 ENCODE 10.2 +47.7 47708 1.6 RNF2 OR52K3P OR52K2 TRIM68 OR52K1 OR52M2P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OR52K2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the OR52K2 gene promoter:
  • GATA-1
  • Pax-6
  • ARP-1
  • Tal-1beta
  • E47
  • AML1a
  • LCR-F1
  • HNF-4alpha2

Genomic Locations for OR52K2 Gene

Genomic Locations for OR52K2 Gene
chr11:4,449,295-4,450,361
(GRCh38/hg38)
Size:
1,067 bases
Orientation:
Plus strand
chr11:4,470,525-4,471,591
(GRCh37/hg19)
Size:
1,067 bases
Orientation:
Plus strand

Genomic View for OR52K2 Gene

Genes around OR52K2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR52K2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR52K2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR52K2 Gene

Proteins for OR52K2 Gene

  • Protein details for OR52K2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGK3-O52K2_HUMAN
    Recommended name:
    Olfactory receptor 52K2
    Protein Accession:
    Q8NGK3
    Secondary Accessions:
    • A8MUY8
    • B2RP35
    • Q6IFK4

    Protein attributes for OR52K2 Gene

    Size:
    314 amino acids
    Molecular mass:
    34926 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR52K2 Gene

Post-translational modifications for OR52K2 Gene

Other Protein References for OR52K2 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR52K2 Gene

Domains & Families for OR52K2 Gene

Gene Families for OR52K2 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OR52K2 Gene

Suggested Antigen Peptide Sequences for OR52K2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NGK3

UniProtKB/Swiss-Prot:

O52K2_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR52K2: view

Function for OR52K2 Gene

Molecular function for OR52K2 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR52K2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
genes like me logo Genes that share ontologies with OR52K2: view
genes like me logo Genes that share phenotypes with OR52K2: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR52K2 Gene

Localization for OR52K2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR52K2 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR52K2 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR52K2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IBA,TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR52K2: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR52K2 Gene

Pathways & Interactions for OR52K2 Gene

genes like me logo Genes that share pathways with OR52K2: view

Pathways by source for OR52K2 Gene

Interacting Proteins for OR52K2 Gene

Gene Ontology (GO) - Biological Process for OR52K2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IBA --
GO:0007186 G-protein coupled receptor signaling pathway IEA --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR52K2: view

No data available for SIGNOR curated interactions for OR52K2 Gene

Drugs & Compounds for OR52K2 Gene

No Compound Related Data Available

Transcripts for OR52K2 Gene

mRNA/cDNA for OR52K2 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OR52K2 Gene

Olfactory receptor, family 52, subfamily K, member 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR52K2 Gene

No ASD Table

Relevant External Links for OR52K2 Gene

GeneLoc Exon Structure for
OR52K2
ECgene alternative splicing isoforms for
OR52K2

Expression for OR52K2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR52K2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of OR52K2 Gene:

OR52K2

SOURCE GeneReport for Unigene cluster for OR52K2 Gene:

Hs.553568
genes like me logo Genes that share expression patterns with OR52K2: view

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR52K2 Gene

Orthologs for OR52K2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR52K2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC466334 33
  • 98.2 (n)
OR52K2 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 34
  • 89 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia OR52K2 34 33
  • 87.26 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Olr45 33
  • 85.03 (n)
mouse
(Mus musculus)
Mammalia Or52k2 51 Olfr552 16 34 33
  • 84.08 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 79 (a)
ManyToMany
-- 34
  • 75 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 49 (a)
ManyToMany
Species where no ortholog for OR52K2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR52K2 Gene

ENSEMBL:
Gene Tree for OR52K2 (if available)
TreeFam:
Gene Tree for OR52K2 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for OR52K2: view image

Paralogs for OR52K2 Gene

Paralogs for OR52K2 Gene

(456) SIMAP similar genes for OR52K2 Gene using alignment to 1 proteins:

  • O52K2_HUMAN
genes like me logo Genes that share paralogs with OR52K2: view

Variants for OR52K2 Gene

Sequence variations from dbSNP and Humsavar for OR52K2 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000642648 -- 4,450,186(+) C/A coding_sequence_variant, missense_variant
rs1003135873 -- 4,449,278(+) T/A upstream_transcript_variant
rs1003771393 -- 4,447,912(+) G/T upstream_transcript_variant
rs1004228426 -- 4,448,093(+) C/A upstream_transcript_variant
rs1004374654 -- 4,447,899(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for OR52K2 Gene

Variant ID Type Subtype PubMed ID
dgv1583n54 CNV loss 21841781
dgv180e214 CNV gain 21293372
dgv181e214 CNV loss 21293372
esv2759797 CNV gain+loss 17122850
esv3625179 CNV loss 21293372
nsv1040030 CNV loss 25217958
nsv428248 CNV gain+loss 18775914
nsv467664 CNV gain 19166990
nsv469800 CNV gain+loss 16826518
nsv469934 CNV gain 18288195
nsv553159 CNV gain 21841781
nsv553163 CNV gain 21841781
nsv832054 CNV gain 17160897
nsv976509 CNV duplication 23825009
nsv982975 CNV duplication 23825009

Variation tolerance for OR52K2 Gene

Residual Variation Intolerance Score: 94.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.46; 91.01% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OR52K2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR52K2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR52K2 Gene

Disorders for OR52K2 Gene

Additional Disease Information for OR52K2

No disorders were found for OR52K2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR52K2 Gene

Publications for OR52K2 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 4 58
  2. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor TD … Sakaki Y (Nature 2006) 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3

Products for OR52K2 Gene

Sources for OR52K2 Gene

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