Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone rec... See more...

Aliases for OR52J3 Gene

Aliases for OR52J3 Gene

  • Olfactory Receptor Family 52 Subfamily J Member 3 2 3 5
  • Olfactory Receptor OR11-32 3 4
  • Olfactory Receptor 52J3 3 4
  • Olfactory Receptor, Family 52, Subfamily J, Member 3 2
  • OR11-32 3
  • OR52J3 5

External Ids for OR52J3 Gene

Previous GeneCards Identifiers for OR52J3 Gene

  • GC11U990367
  • GC11P005034
  • GC11P005024

Summaries for OR52J3 Gene

Entrez Gene Summary for OR52J3 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR52J3 Gene

OR52J3 (Olfactory Receptor Family 52 Subfamily J Member 3) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory transduction. Gene Ontology (GO) annotations related to this gene include G protein-coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR52E8.

UniProtKB/Swiss-Prot Summary for OR52J3 Gene

Gene Wiki entry for OR52J3 Gene

No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OR52J3 Gene

Genomics for OR52J3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for OR52J3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J005379 Enhancer 0.2 FANTOM5 8 +333.5 333466 0 piR-48209-078 OR51V1 OR51T1 HBB OR51B5 OR51G1 OR56B1 OR52J3 OR51L1 OR52N4
GH11J005546 Enhancer 0.2 FANTOM5 6.9 +499.7 499720 0.1 OR56A1 OR56A3 OR51Q1 OR52E8 OR52N1 OR56A4 OR52N4 OR52E2 OR52E4 OR52A1
GH11J005328 Enhancer 0.2 FANTOM5 6.3 +282.7 282652 0.4 HSALNG0082369 piR-48209-076 OR51G1 OR51T1 OR52N2 OR52N4 OR52D1 OR52J3 MMP26 OR51L1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OR52J3 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for OR52J3

Top Transcription factor binding sites by QIAGEN in the OR52J3 gene promoter:
  • AML1a
  • E47
  • Evi-1
  • FOXO4
  • ITF-2
  • PPAR-gamma1
  • PPAR-gamma2
  • Tal-1
  • Tal-1beta

Genomic Locations for OR52J3 Gene

Latest Assembly
chr11:5,046,526-5,047,461
(GRCh38/hg38)
Size:
936 bases
Orientation:
Plus strand

Previous Assembly
chr11:5,067,756-5,068,691
(GRCh37/hg19 by Entrez Gene)
Size:
936 bases
Orientation:
Plus strand

chr11:5,067,756-5,068,691
(GRCh37/hg19 by Ensembl)
Size:
936 bases
Orientation:
Plus strand

Genomic View for OR52J3 Gene

Genes around OR52J3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR52J3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR52J3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR52J3 Gene

Proteins for OR52J3 Gene

  • Protein details for OR52J3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NH60-O52J3_HUMAN
    Recommended name:
    Olfactory receptor 52J3
    Protein Accession:
    Q8NH60
    Secondary Accessions:
    • Q6IFE4

    Protein attributes for OR52J3 Gene

    Size:
    311 amino acids
    Molecular mass:
    35091 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR52J3 Gene

Post-translational modifications for OR52J3 Gene

  • Glycosylation at Asn5
  • Modification sites at PhosphoSitePlus

Other Protein References for OR52J3 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR52J3 Gene

Domains & Families for OR52J3 Gene

Gene Families for OR52J3 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OR52J3 Gene

InterPro:
Blocks:
  • Olfactory receptor signature

Suggested Antigen Peptide Sequences for OR52J3 Gene

GenScript: Design optimal peptide antigens:
  • Olfactory receptor OR11-32 (O52J3_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q8NH60

UniProtKB/Swiss-Prot:

O52J3_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR52J3: view

Function for OR52J3 Gene

Molecular function for OR52J3 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Phenotypes From GWAS Catalog for OR52J3 Gene

Gene Ontology (GO) - Molecular Function for OR52J3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G protein-coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR52J3: view
genes like me logo Genes that share phenotypes with OR52J3: view

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OR52J3

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR52J3 Gene

Localization for OR52J3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR52J3 Gene

Cell membrane. Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR52J3 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR52J3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR52J3: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR52J3 Gene

Pathways & Interactions for OR52J3 Gene

genes like me logo Genes that share pathways with OR52J3: view

Pathways by source for OR52J3 Gene

Interacting Proteins for OR52J3 Gene

Gene Ontology (GO) - Biological Process for OR52J3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G protein-coupled receptor signaling pathway IEA --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR52J3: view

No data available for SIGNOR curated interactions for OR52J3 Gene

Drugs & Compounds for OR52J3 Gene

(1) Drugs for OR52J3 Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
lithium Experimental Pharma 0
genes like me logo Genes that share compounds with OR52J3: view

Transcripts for OR52J3 Gene

mRNA/cDNA for OR52J3 Gene

1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OR52J3

Alternative Splicing Database (ASD) splice patterns (SP) for OR52J3 Gene

No ASD Table

Relevant External Links for OR52J3 Gene

GeneLoc Exon Structure for
OR52J3

Expression for OR52J3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OR52J3 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for OR52J3

SOURCE GeneReport for Unigene cluster for OR52J3 Gene:

Hs.553558
genes like me logo Genes that share expression patterns with OR52J3: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR52J3 Gene

Orthologs for OR52J3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR52J3 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC466364 29
  • 99.04 (n)
OR52J3 30
  • 99 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia -- 30
  • 90 (a)
OneToMany
-- 30
  • 89 (a)
OneToMany
OR52J3 29
  • 87.03 (n)
Cow
(Bos Taurus)
Mammalia LOC100852055 29
  • 85.96 (n)
-- 30
  • 85 (a)
OneToMany
-- 30
  • 84 (a)
OneToMany
Mouse
(Mus musculus)
Mammalia Or52j3 45 Olfr592 29 16 30
  • 80.8 (n)
OneToOne
Or52ad1 45 Olfr600
  • chr7:103,345,985-103,346,926
Rat
(Rattus norvegicus)
Mammalia Olr81 29
  • 80.46 (n)
Oppossum
(Monodelphis domestica)
Mammalia -- 30
  • 75 (a)
OneToMany
-- 30
  • 74 (a)
OneToMany
-- 30
  • 73 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia OR52J3 30
  • 54 (a)
OneToOne
Species where no ortholog for OR52J3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for OR52J3 Gene

ENSEMBL:
Gene Tree for OR52J3 (if available)
TreeFam:
Gene Tree for OR52J3 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for OR52J3: view image
Alliance of Genome Resources:
Additional Orthologs for OR52J3

Paralogs for OR52J3 Gene

(454) SIMAP similar genes for OR52J3 Gene using alignment to 1 proteins:

  • O52J3_HUMAN

Pseudogenes.org Pseudogenes for OR52J3 Gene

genes like me logo Genes that share paralogs with OR52J3: view

Variants for OR52J3 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for OR52J3 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
rs17350764 -- p.Val226Ile
rs2500016 -- p.Thr77Ala
rs2500017 -- p.Val128Ile
rs2500018 -- p.Gln141Leu

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for OR52J3 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for OR52J3 Gene

Variant ID Type Subtype PubMed ID
esv2759799 CNV loss 17122850
esv2760169 CNV gain+loss 21179565
esv3625204 CNV loss 21293372
nsv1054847 CNV gain 25217958
nsv515951 CNV loss 19592680
nsv526998 CNV loss 19592680
nsv553219 CNV gain 21841781

Variation tolerance for OR52J3 Gene

Residual Variation Intolerance Score: 97% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 23.28; 99.53% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OR52J3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR52J3
Leiden Open Variation Database (LOVD)
OR52J3

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR52J3 Gene

Disorders for OR52J3 Gene

Additional Disease Information for OR52J3

No disorders were found for OR52J3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR52J3 Gene

Publications for OR52J3 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 4
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3
  3. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor TD … Sakaki Y (Nature 2006) 4

Products for OR52J3 Gene

Sources for OR52J3 Gene