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OR4K17 Gene(Protein Coding)

Olfactory Receptor Family 4 Subfamily K Member 17

GCID:
GC14P020117
GIFtS:
32
Genes Participants
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Aliases for OR4K17 Gene

Aliases for OR4K17 Gene

  • Olfactory Receptor Family 4 Subfamily K Member 17 2 3 5
  • Olfactory Receptor OR14-29 3 4
  • Olfactory Receptor, Family 4, Subfamily K, Member 17 2
  • Olfactory Receptor 4K17 3
  • OR14-29 3

External Ids for OR4K17 Gene

Previous GeneCards Identifiers for OR4K17 Gene

  • GC14U990438
  • GC14P018576
  • GC14P019655
  • GC14P020585

Summaries for OR4K17 Gene

Entrez Gene Summary for OR4K17 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR4K17 Gene

OR4K17 (Olfactory Receptor Family 4 Subfamily K Member 17) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. Gene Ontology (GO) annotations related to this gene include G-protein coupled receptor activity and transmembrane signaling receptor activity. An important paralog of this gene is OR4K15.

UniProtKB/Swiss-Prot for OR4K17 Gene

  • Odorant receptor.

Gene Wiki entry for OR4K17 Gene

Additional gene information for OR4K17 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR4K17 Gene

Genomics for OR4K17 Gene

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  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for OR4K17 Gene

Promoters and enhancers for OR4K17 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH14I020591 Enhancer 0.3 FANTOM5 18.4 +481.1 481132 0.1 IKZF1 RNASE12 OR4K17 OR6S1 OR11H6 OR4N5 OR11H4 RNASE8 EDDM3B RNASE9 RNASE13
GH14I020071 Enhancer 0.3 FANTOM5 16.7 -39.0 -38971 0.2 OR4K17 OR4K14 OR4L1 OR4Q3 OR11H4 OR11H6 OR4N5 OR4M1 OR4K5 OR4K1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OR4K17 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the OR4K17 gene promoter:

Genomic Locations for OR4K17 Gene

Genomic Locations for OR4K17 Gene
chr14:20,110,739-20,122,199
(GRCh38/hg38)
Size:
11,461 bases
Orientation:
Plus strand
chr14:20,585,566-20,586,597
(GRCh37/hg19)

Genomic View for OR4K17 Gene

Genes around OR4K17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR4K17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR4K17 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for OR4K17 Gene

Proteins for OR4K17 Gene

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  • Protein details for OR4K17 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGC6-OR4KH_HUMAN
    Recommended name:
    Olfactory receptor 4K17
    Protein Accession:
    Q8NGC6
    Secondary Accessions:
    • Q6IF12

    Protein attributes for OR4K17 Gene

    Size:
    315 amino acids
    Molecular mass:
    35312 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=DAA04848.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for OR4K17 Gene

Post-translational modifications for OR4K17 Gene

  • Glycosylation at isoforms=8 and Asn267
  • Modification sites at PhosphoSitePlus

Other Protein References for OR4K17 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR4K17 Gene

Domains & Families for OR4K17 Gene

Gene Families for OR4K17 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OR4K17 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for OR4K17 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NGC6

UniProtKB/Swiss-Prot:

OR4KH_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR4K17: view

Function for OR4K17 Gene

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  2. CRISPR
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Molecular function for OR4K17 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR4K17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004888 transmembrane signaling receptor activity IBA --
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR4K17: view
genes like me logo Genes that share phenotypes with OR4K17: view

Animal Model Products

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No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR4K17 Gene

Localization for OR4K17 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR4K17 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR4K17 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR4K17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR4K17: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR4K17 Gene

Pathways & Interactions for OR4K17 Gene

genes like me logo Genes that share pathways with OR4K17: view

Pathways by source for OR4K17 Gene

1 KEGG pathway for OR4K17 Gene

Interacting Proteins for OR4K17 Gene

STRING Interaction Network Preview (showing 5 interactants - click image to see 12)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000319197%0d%0a9606.ENSP00000334051%0d%0a9606.ENSP00000367869%0d%0a9606.ENSP00000248572%0d%0a9606.ENSP00000317578%0d%0a9606.ENSP00000366488%0d%0a
Selected Interacting proteins: ENSP00000319197 for OR4K17 Gene via STRING

Gene Ontology (GO) - Biological Process for OR4K17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway TAS --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050907 detection of chemical stimulus involved in sensory perception IBA --
genes like me logo Genes that share ontologies with OR4K17: view

No data available for SIGNOR curated interactions for OR4K17 Gene

Drugs & Compounds for OR4K17 Gene

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No Compound Related Data Available

Transcripts for OR4K17 Gene

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mRNA/cDNA for OR4K17 Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR4K17 Gene

No ASD Table

Relevant External Links for OR4K17 Gene

GeneLoc Exon Structure for
OR4K17
ECgene alternative splicing isoforms for
OR4K17

Expression for OR4K17 Gene

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  1. Primer
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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR4K17 Gene

mRNA expression in normal human tissues for OR4K17 Gene
mRNA expression by GTEx for OR4K17 GenemRNA expression by BioGPS for OR4K17 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR4K17 Gene:

OR4K17

SOURCE GeneReport for Unigene cluster for OR4K17 Gene:

Hs.553765
genes like me logo Genes that share expression patterns with OR4K17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR4K17 Gene

Orthologs for OR4K17 Gene

This gene was present in the common ancestor of chordates.

Orthologs for OR4K17 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia LOC736751 33
  • 97.57 (n)
OR4K17 34
  • 95 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia -- 34
  • 54 (a)
 ManyToMany
lizard
(Anolis carolinensis)
 Reptilia -- 34
  • 46 (a)
 OneToMany
Species where no ortholog for OR4K17 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR4K17 Gene

ENSEMBL:
Gene Tree for OR4K17 (if available)
TreeFam:
Gene Tree for OR4K17 (if available)

Paralogs for OR4K17 Gene

Paralogs for OR4K17 Gene

(448) SIMAP similar genes for OR4K17 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR4K17: view

Variants for OR4K17 Gene

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  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for OR4K17 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000360711 -- 20,116,277(+) T/C upstream_transcript_variant
rs1000556812 -- 20,115,504(+) T/C upstream_transcript_variant
rs1001420938 -- 20,117,269(+) C/A upstream_transcript_variant
rs1002360616 -- 20,118,736(+) G/T downstream_transcript_variant
rs1002906390 -- 20,118,593(+) G/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for OR4K17 Gene

Variant ID Type Subtype PubMed ID
dgv122n21 CNV gain 19592680
dgv3532n54 CNV loss 21841781
dgv81e55 CNV gain 17911159
dgv88n111 CNV deletion 26073780
esv2751268 CNV gain 17911159
esv2761819 CNV loss 21179565
esv3580929 CNV loss 25503493
nsv1037890 CNV gain 25217958
nsv1202 CNV deletion 18451855
nsv832738 CNV loss 17160897

Variation tolerance for OR4K17 Gene

Residual Variation Intolerance Score: 68.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 13.28; 95.31% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OR4K17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR4K17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR4K17 Gene

Disorders for OR4K17 Gene

Additional Disease Information for OR4K17

Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for OR4K17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR4K17 Gene

Publications for OR4K17 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 4 58
  2. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R … Weissenbach J (Nature 2003) 4 58

Products for OR4K17 Gene

Sources for OR4K17 Gene

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