OR4K17 Gene (Protein Coding)

Olfactory Receptor Family 4 Subfamily K Member 17

GC14P020205
GIFtS:
26
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone rec... See more...

Aliases for OR4K17 Gene

Aliases for OR4K17 Gene

  • Olfactory Receptor Family 4 Subfamily K Member 17 2 3 5
  • Olfactory Receptor OR14-29 3 4
  • Olfactory Receptor 4K17 3 4
  • Olfactory Receptor, Family 4, Subfamily K, Member 17 2
  • OR14-29 3
  • OR4K17 5

External Ids for OR4K17 Gene

Previous GeneCards Identifiers for OR4K17 Gene

  • GC14U990438
  • GC14P018576
  • GC14P019655
  • GC14P020585
  • GC14P020117

Summaries for OR4K17 Gene

Entrez Gene Summary for OR4K17 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR4K17 Gene

OR4K17 (Olfactory Receptor Family 4 Subfamily K Member 17) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory transduction. Gene Ontology (GO) annotations related to this gene include G protein-coupled receptor activity and transmembrane signaling receptor activity. An important paralog of this gene is OR4K15.

UniProtKB/Swiss-Prot Summary for OR4K17 Gene

Gene Wiki entry for OR4K17 Gene

Additional gene information for OR4K17 Gene

No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OR4K17 Gene

Genomics for OR4K17 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for OR4K17 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH14J020591 Enhancer 0.4 FANTOM5 18.4 +481.1 481132 0.1 CBX2 IKZF1 RNASE12 OR4K17 OR6S1 OR11H6 OR4N5 OR11H4 RNASE8 EDDM3B RNASE9 RNASE13
GH14J020071 Enhancer 0.2 FANTOM5 16.7 -39.0 -38971 0.2 OR4K17 OR4K14 OR4L1 OR4Q3 OR11H4 OR11H6 OR4N5 OR4M1 OR4K5 OR4K1
GH14J020011 Enhancer 0.2 Ensembl 10.6 -99.2 -99238 0.2 OR4K17 OR4K14 piR-31534-162 OR4Q2 HSALNG0099763
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OR4K17 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for OR4K17

Top Transcription factor binding sites by QIAGEN in the OR4K17 gene promoter:
  • AML1a
  • SRF
  • SRF (504 AA)
  • TBP
  • TFIID

Genomic Locations for OR4K17 Gene

Latest Assembly
chr14:20,110,739-20,122,199
(GRCh38/hg38)
Size:
11,461 bases
Orientation:
Plus strand

Previous Assembly
chr14:20,578,898-20,590,358
(GRCh37/hg19 by Entrez Gene)
Size:
11,461 bases
Orientation:
Plus strand

chr14:20,585,566-20,586,597
(GRCh37/hg19 by Ensembl)
Size:
1,032 bases
Orientation:
Plus strand

Genomic View for OR4K17 Gene

Genes around OR4K17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR4K17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR4K17 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for OR4K17 Gene

Proteins for OR4K17 Gene

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  • Protein details for OR4K17 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGC6-OR4KH_HUMAN
    Recommended name:
    Olfactory receptor 4K17
    Protein Accession:
    Q8NGC6
    Secondary Accessions:
    • Q6IF12

    Protein attributes for OR4K17 Gene

    Size:
    315 amino acids
    Molecular mass:
    35312 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=DAA04848.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for OR4K17 Gene

Post-translational modifications for OR4K17 Gene

  • Glycosylation at Asn8 and Asn267
  • Modification sites at PhosphoSitePlus

Other Protein References for OR4K17 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR4K17 Gene

Domains & Families for OR4K17 Gene

Gene Families for OR4K17 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OR4K17 Gene

InterPro:
Blocks:
  • Olfactory receptor signature

Suggested Antigen Peptide Sequences for OR4K17 Gene

GenScript: Design optimal peptide antigens:
  • Olfactory receptor OR14-29 (OR4KH_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q8NGC6

UniProtKB/Swiss-Prot:

OR4KH_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR4K17: view

Function for OR4K17 Gene

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  6. Cell Lines for research

Molecular function for OR4K17 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR4K17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G protein-coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR4K17: view
genes like me logo Genes that share phenotypes with OR4K17: view

Animal Models for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OR4K17

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR4K17 Gene

Localization for OR4K17 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR4K17 Gene

Cell membrane. Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR4K17 gene
Compartment Confidence
plasma membrane 5
cytoskeleton 1

Gene Ontology (GO) - Cellular Components for OR4K17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR4K17: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR4K17 Gene

Pathways & Interactions for OR4K17 Gene

genes like me logo Genes that share pathways with OR4K17: view

Pathways by source for OR4K17 Gene

1 KEGG pathway for OR4K17 Gene

Interacting Proteins for OR4K17 Gene

Gene Ontology (GO) - Biological Process for OR4K17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G protein-coupled receptor signaling pathway IEA --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR4K17: view

No data available for SIGNOR curated interactions for OR4K17 Gene

Drugs & Compounds for OR4K17 Gene

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No Compound Related Data Available

Transcripts for OR4K17 Gene

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mRNA/cDNA for OR4K17 Gene

1 REFSEQ mRNAs :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OR4K17

Alternative Splicing Database (ASD) splice patterns (SP) for OR4K17 Gene

No ASD Table

Relevant External Links for OR4K17 Gene

GeneLoc Exon Structure for
OR4K17

Expression for OR4K17 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OR4K17 Gene

mRNA expression in normal human tissues for OR4K17 Gene
mRNA expression by BioGPS for OR4K17 GenemRNA expression by GTEx for OR4K17 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for OR4K17

SOURCE GeneReport for Unigene cluster for OR4K17 Gene:

Hs.553765
genes like me logo Genes that share expression patterns with OR4K17: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR4K17 Gene

Orthologs for OR4K17 Gene

This gene was present in the common ancestor of chordates.

Orthologs for OR4K17 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia LOC736751 29
  • 97.57 (n)
OR4K17 30
  • 95 (a)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia -- 30
  • 54 (a)
 ManyToMany
Lizard
(Anolis carolinensis)
 Reptilia -- 30
  • 46 (a)
 OneToMany
Species where no ortholog for OR4K17 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for OR4K17 Gene

ENSEMBL:
Gene Tree for OR4K17 (if available)
TreeFam:
Gene Tree for OR4K17 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for OR4K17: view image
Alliance of Genome Resources:
Additional Orthologs for OR4K17

Paralogs for OR4K17 Gene

Paralogs for OR4K17 Gene

(448) SIMAP similar genes for OR4K17 Gene using alignment to 1 proteins:

  • OR4KH_HUMAN
genes like me logo Genes that share paralogs with OR4K17: view

Variants for OR4K17 Gene

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dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for OR4K17 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for OR4K17 Gene

Variant ID Type Subtype PubMed ID
dgv122n21 CNV gain 19592680
dgv3532n54 CNV loss 21841781
dgv81e55 CNV gain 17911159
dgv88n111 CNV deletion 26073780
esv2751268 CNV gain 17911159
esv2761819 CNV loss 21179565
esv3580929 CNV loss 25503493
nsv1037890 CNV gain 25217958
nsv1202 CNV deletion 18451855
nsv832738 CNV loss 17160897

Variation tolerance for OR4K17 Gene

Residual Variation Intolerance Score: 68.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 13.28; 95.31% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OR4K17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR4K17
Leiden Open Variation Database (LOVD)
OR4K17

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for OR4K17 Gene

Disorders for OR4K17 Gene

Additional Disease Information for OR4K17

Human Genome Epidemiology Navigator
(HuGE)
Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform

No disorders were found for OR4K17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR4K17 Gene

Publications for OR4K17 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 4
  2. Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei. (PMID: 30021884) Fasci D … Heck AJR (Molecular & cellular proteomics : MCP 2018) 3
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3
  4. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R … Weissenbach J (Nature 2003) 4

ExternalLinks

View latest publications for OR4K17 gene in Mastermind

Products for OR4K17 Gene

Sources for OR4K17 Gene