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OR3A4P Gene(Pseudogene)

Olfactory Receptor Family 3 Subfamily A Member 4 Pseudogene

GCID:
GC17P003310
GIFtS:
23
Genes Participants
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Aliases for OR3A4P Gene

Aliases for OR3A4P Gene

  • Olfactory Receptor Family 3 Subfamily A Member 4 Pseudogene 2 3 5
  • Olfactory Receptor, Family 3, Subfamily A, Member 4 2 3
  • OR17-24 3 4
  • OR3A5P 3 4
  • OR3A4 3 4
  • Olfactory Receptor, Family 3, Subfamily A, Member 4 Pseudogene 2
  • Olfactory Receptor, Family 3, Subfamily A, Member 5 Pseudogene 3
  • Olfactory Receptor OR17-13 Pseudogene 3
  • Olfactory Receptor OR17-16 Pseudogene 3
  • Olfactory Receptor 17-24 4
  • Olfactory Receptor 3A5 4
  • OR17-16 3
  • OLFRA05 3
  • OLFRA06 3
  • OR17-13 3
  • OR17-25 3
  • OR24 3
  • OR25 3

External Ids for OR3A4P Gene

Previous HGNC Symbols for OR3A4P Gene

  • OR3A4

Previous GeneCards Identifiers for OR3A4P Gene

  • GC17P003214
  • GC17P003216
  • GC17P003222
  • GC17P003228
  • GC17P003233

Summaries for OR3A4P Gene

Entrez Gene Summary for OR3A4P Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. This olfactory receptor gene is transcribed and contains an intact ORF, but it is predicted to be a pseudogene due to a poorly conserved 7-transmembrane domain structure. [provided by RefSeq, Sep 2008]

GeneCards Summary for OR3A4P Gene

OR3A4P (Olfactory Receptor Family 3 Subfamily A Member 4 Pseudogene) is a Pseudogene. Among its related pathways are Peptide ligand-binding receptors.

UniProtKB/Swiss-Prot for OR3A4P Gene

  • Odorant receptor.

Gene Wiki entry for OR3A4P Gene

Additional gene information for OR3A4P Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR3A4P Gene

Genomics for OR3A4P Gene

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  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for OR3A4P Gene

Promoters and enhancers for OR3A4P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17I003269 Enhancer 0.2 FANTOM5 0.3 -40.0 -39959 0.1 PIR53451 RAP1GAP2 GC17P003312 OR3A4P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OR3A4P on UCSC Golden Path with GeneCards custom track

Genomic Locations for OR3A4P Gene

Genomic Locations for OR3A4P Gene
chr17:3,309,986-3,311,934
(GRCh38/hg38)
Size:
1,949 bases
Orientation:
Plus strand
chr17:3,213,539-3,214,740
(GRCh37/hg19)

Genomic View for OR3A4P Gene

Genes around OR3A4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR3A4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR3A4P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for OR3A4P Gene

Proteins for OR3A4P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for OR3A4P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P47883-OR3A4_HUMAN
    Recommended name:
    Putative olfactory receptor 3A4
    Protein Accession:
    P47883
    Secondary Accessions:
    • Q96R24

    Protein attributes for OR3A4P Gene

    Size:
    348 amino acids
    Molecular mass:
    37194 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR3A4P Gene

Post-translational modifications for OR3A4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for OR3A4P Gene

Domains & Families for OR3A4P Gene

Gene Families for OR3A4P Gene

HGNC:

Protein Domains for OR3A4P Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for OR3A4P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P47883

UniProtKB/Swiss-Prot:

OR3A4_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR3A4P: view

Function for OR3A4P Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for OR3A4P Gene

GENATLAS Biochemistry:
olfactory receptor gene family 3,subfamily A,member 4,pseudogene,G protein coupled receptor superfamily
UniProtKB/Swiss-Prot Function:
Odorant receptor.

Phenotypes for OR3A4P Gene

GenomeRNAi human phenotypes for OR3A4P:
genes like me logo Genes that share phenotypes with OR3A4P: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR3A4P Gene

Localization for OR3A4P Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR3A4P Gene

Cell membrane; Multi-pass membrane protein.

No data available for Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OR3A4P Gene

Pathways & Interactions for OR3A4P Gene

genes like me logo Genes that share pathways with OR3A4P: view

Pathways by source for OR3A4P Gene

1 BioSystems pathway for OR3A4P Gene

Interacting Proteins for OR3A4P Gene

Gene Ontology (GO) - Biological Process for OR3A4P Gene

None

No data available for SIGNOR curated interactions for OR3A4P Gene

Drugs & Compounds for OR3A4P Gene

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  1. Drug
No Compound Related Data Available

Transcripts for OR3A4P Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for OR3A4P Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR3A4P Gene

No ASD Table

Relevant External Links for OR3A4P Gene

GeneLoc Exon Structure for
OR3A4P
ECgene alternative splicing isoforms for
OR3A4P

Expression for OR3A4P Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR3A4P Gene

mRNA expression in normal human tissues for OR3A4P Gene
mRNA expression by GTEx for OR3A4P Gene

mRNA differential expression in normal tissues according to GTEx for OR3A4P Gene

This gene is overexpressed in Testis (x31.9), Brain - Caudate (basal ganglia) (x7.7), Cervix - Ectocervix (x6.8), and Cervix - Endocervix (x6.6).

NURSA nuclear receptor signaling pathways regulating expression of OR3A4P Gene:

OR3A4P

SOURCE GeneReport for Unigene cluster for OR3A4P Gene:

Hs.632245
genes like me logo Genes that share expression patterns with OR3A4P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR3A4P Gene

Orthologs for OR3A4P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for OR3A4P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
 Mammalia Or3a4 51 Olfr399
  • chr11:74,053,825-74,054,757
Species where no ortholog for OR3A4P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR3A4P Gene

ENSEMBL:
Gene Tree for OR3A4P (if available)
TreeFam:
Gene Tree for OR3A4P (if available)

Paralogs for OR3A4P Gene

(434) SIMAP similar genes for OR3A4P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR3A4P: view

No data available for Paralogs for OR3A4P Gene

Variants for OR3A4P Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for OR3A4P Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1002135297 -- 3,311,507(+) C/T downstream_transcript_variant
rs1003141282 -- 3,310,505(+) C/T non_coding_transcript_variant
rs1004177834 -- 3,309,024(+) G/A upstream_transcript_variant
rs1004814995 -- 3,308,825(+) C/T upstream_transcript_variant
rs1007701812 -- 3,310,487(+) C/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for OR3A4P Gene

Variant ID Type Subtype PubMed ID
esv2660206 CNV deletion 23128226
esv2674191 CNV deletion 23128226
esv3639742 CNV loss 21293372
esv3892949 CNV loss 25118596
esv3892950 CNV loss 25118596
nsv1060926 CNV gain 25217958
nsv1065489 CNV gain 25217958
nsv457638 CNV gain 19166990
nsv457639 CNV gain 19166990
nsv470570 CNV gain 18288195
nsv520474 CNV loss 19592680
nsv574232 CNV gain 21841781
nsv574233 CNV gain 21841781
nsv574234 CNV gain 21841781
nsv574235 CNV loss 21841781

Additional Variant Information for OR3A4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR3A4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OR3A4P Gene

Disorders for OR3A4P Gene

Additional Disease Information for OR3A4P

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for OR3A4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR3A4P Gene

Publications for OR3A4P Gene

  1. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T … Shamir R (Genomics 2002) 3 4 58
  2. Sequence analysis in the olfactory receptor gene cluster on human chromosome 17: recombinatorial events affecting receptor diversity. (PMID: 8921386) Glusman G … Lancet D (Genomics 1996) 3 22 58
  3. Olfactory receptor gene cluster on human chromosome 17: possible duplication of an ancestral receptor repertoire. (PMID: 8004088) Ben-Arie N … Lehrach H (Human molecular genetics 1994) 3 4 58
  4. Long noncoding RNA OR3A4 promotes metastasis and tumorigenicity in gastric cancer. (PMID: 26863570) Guo X … Kuang Y (Oncotarget 2016) 3 58
  5. A probabilistic classifier for olfactory receptor pseudogenes. (PMID: 16939646) Menashe I … Lancet D (BMC bioinformatics 2006) 3 58

Products for OR3A4P Gene

Sources for OR3A4P Gene

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