OR2T4 Gene (Protein Coding)

Olfactory Receptor Family 2 Subfamily T Member 4

GC01P248361
GIFtS:
27
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone rec... See more...

Aliases for OR2T4 Gene

Aliases for OR2T4 Gene

  • Olfactory Receptor Family 2 Subfamily T Member 4 2 3 5
  • Olfactory Receptor OR1-60 3 4
  • Olfactory Receptor 2T4 3 4
  • OR2T4Q 2 3
  • Olfactory Receptor, Family 2, Subfamily T, Member 4 2
  • OR1-60 3
  • OR2T4 5

External Ids for OR2T4 Gene

Previous GeneCards Identifiers for OR2T4 Gene

  • GC01U990404
  • GC01P245423
  • GC01P244850
  • GC01P246591
  • GC01P248524

Summaries for OR2T4 Gene

Entrez Gene Summary for OR2T4 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR2T4 Gene

OR2T4 (Olfactory Receptor Family 2 Subfamily T Member 4) is a Protein Coding gene. Diseases associated with OR2T4 include Autosomal Recessive Non-Syndromic Intellectual Disability. Among its related pathways are Signaling by GPCR and Olfactory transduction. Gene Ontology (GO) annotations related to this gene include G protein-coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR2T5.

UniProtKB/Swiss-Prot Summary for OR2T4 Gene

Gene Wiki entry for OR2T4 Gene

Additional gene information for OR2T4 Gene

No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OR2T4 Gene

Genomics for OR2T4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for OR2T4 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J248471 Enhancer 0.5 FANTOM5 6.6 +110.2 110171 0.4 ZNF207 MAFG HDGF TARDBP OR2T3 OR14I1 OR2T1 OR2M2 OR2M7 OR2M5 OR2M4 OR2T33 OR2T6 OR2M3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OR2T4 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for OR2T4

Top Transcription factor binding sites by QIAGEN in the OR2T4 gene promoter:
  • AML1a
  • CREB
  • deltaCREB
  • Nkx3-1
  • Nkx3-1 v1
  • Nkx3-1 v2
  • Nkx3-1 v3
  • Nkx3-1 v4
  • SRF

Genomic Locations for OR2T4 Gene

Latest Assembly
chr1:248,361,581-248,362,627
(GRCh38/hg38)
Size:
1,047 bases
Orientation:
Plus strand

Previous Assembly
chr1:248,524,883-248,525,929
(GRCh37/hg19 by Entrez Gene)
Size:
1,047 bases
Orientation:
Plus strand

chr1:248,524,883-248,525,929
(GRCh37/hg19 by Ensembl)
Size:
1,047 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr1(ALT_REF_LOCI_1):9,639-10,601 (+)
  • chr1(ALT_REF_LOCI_2):9,639-10,601 (+)

Genomic View for OR2T4 Gene

Genes around OR2T4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR2T4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR2T4 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for OR2T4 Gene

Proteins for OR2T4 Gene

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  3. Assay products for research

  • Protein details for OR2T4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NH00-OR2T4_HUMAN
    Recommended name:
    Olfactory receptor 2T4
    Protein Accession:
    Q8NH00
    Secondary Accessions:
    • Q6IEZ8

    Protein attributes for OR2T4 Gene

    Size:
    348 amino acids
    Molecular mass:
    39414 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC05842.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for OR2T4 Gene

Post-translational modifications for OR2T4 Gene

  • Glycosylation at Asn31, Asn37, and Asn218
  • Modification sites at PhosphoSitePlus

Other Protein References for OR2T4 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR2T4 Gene

Domains & Families for OR2T4 Gene

Gene Families for OR2T4 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OR2T4 Gene

InterPro:
Blocks:
  • Olfactory receptor signature

Suggested Antigen Peptide Sequences for OR2T4 Gene

GenScript: Design optimal peptide antigens:
  • Olfactory receptor OR1-60 (OR2T4_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q8NH00

UniProtKB/Swiss-Prot:

OR2T4_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR2T4: view

Function for OR2T4 Gene

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  4. Inhibitory RNAs for research
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  6. Cell Lines for research

Molecular function for OR2T4 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR2T4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G protein-coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR2T4: view
genes like me logo Genes that share phenotypes with OR2T4: view

Animal Models for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OR2T4

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR2T4 Gene

Localization for OR2T4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR2T4 Gene

Cell membrane. Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR2T4 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR2T4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA,TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR2T4: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR2T4 Gene

Pathways & Interactions for OR2T4 Gene

genes like me logo Genes that share pathways with OR2T4: view

Pathways by source for OR2T4 Gene

1 KEGG pathway for OR2T4 Gene

Gene Ontology (GO) - Biological Process for OR2T4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G protein-coupled receptor signaling pathway IEA --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR2T4: view

No data available for SIGNOR curated interactions for OR2T4 Gene

Drugs & Compounds for OR2T4 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for OR2T4 Gene

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  2. miRNA products for research
  3. Inhibitory RNAs for research
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mRNA/cDNA for OR2T4 Gene

1 REFSEQ mRNAs :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OR2T4

Alternative Splicing Database (ASD) splice patterns (SP) for OR2T4 Gene

No ASD Table

Relevant External Links for OR2T4 Gene

GeneLoc Exon Structure for
OR2T4

Expression for OR2T4 Gene

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  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OR2T4 Gene

mRNA expression in normal human tissues for OR2T4 Gene
mRNA expression by GTEx for OR2T4 GenemRNA expression by BioGPS for OR2T4 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for OR2T4

SOURCE GeneReport for Unigene cluster for OR2T4 Gene:

Hs.553586
genes like me logo Genes that share expression patterns with OR2T4: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR2T4 Gene

Orthologs for OR2T4 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR2T4 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia LOC469770 29
  • 98.47 (n)
OR2T4 30
  • 97 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia LOC482236 29
  • 84.9 (n)
-- 30
  • 81 (a)
 ManyToMany
-- 30
  • 80 (a)
 ManyToMany
Cow
(Bos Taurus)
 Mammalia LOC615281 29
  • 84.62 (n)
-- 30
  • 81 (a)
 ManyToMany
-- 30
  • 79 (a)
 ManyToMany
Mouse
(Mus musculus)
 Mammalia Olfr330 29 16 30
  • 83.07 (n)
 ManyToMany
Olfr328 16 30
  • 76 (a)
 ManyToMany
Olfr224 16 30
  • 75 (a)
 ManyToMany
Olfr331 16 30
  • 75 (a)
 ManyToMany
Olfr325 16 30
  • 74 (a)
 ManyToMany
Olfr329 16
Oppossum
(Monodelphis domestica)
 Mammalia -- 30
  • 74 (a)
 OneToMany
Species where no ortholog for OR2T4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for OR2T4 Gene

ENSEMBL:
Gene Tree for OR2T4 (if available)
TreeFam:
Gene Tree for OR2T4 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for OR2T4: view image
Alliance of Genome Resources:
Additional Orthologs for OR2T4

Paralogs for OR2T4 Gene

Paralogs for OR2T4 Gene

(437) SIMAP similar genes for OR2T4 Gene using alignment to 1 proteins:

  • OR2T4_HUMAN
genes like me logo Genes that share paralogs with OR2T4: view

Variants for OR2T4 Gene

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Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for OR2T4 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
rs57795102 -- p.Asn31Ser

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for OR2T4 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for OR2T4 Gene

Variant ID Type Subtype PubMed ID
dgv17e55 CNV loss 17911159
dgv20n17 CNV loss 16327808
dgv606n100 CNV gain 25217958
dgv607n100 CNV loss 25217958
dgv608n100 CNV gain 25217958
dgv613n100 CNV loss 25217958
dgv906n54 CNV gain 21841781
esv2728151 CNV deletion 23290073
esv2728162 CNV deletion 23290073
esv2750832 CNV gain 17911159
esv2750835 CNV gain 17911159
esv2759015 CNV gain+loss 17122850
esv3589547 CNV gain 21293372
esv3891415 CNV gain 25118596
nsv1001474 CNV gain 25217958
nsv1004790 CNV gain 25217958
nsv1013273 CNV gain 25217958
nsv1127074 CNV deletion 24896259
nsv1135761 CNV deletion 24896259
nsv428357 CNV loss 18775914
nsv515858 CNV gain+loss 19592680
nsv5332 CNV deletion 18451855
nsv549603 CNV loss 21841781
nsv549626 CNV loss 21841781
nsv549630 CNV loss 21841781
nsv9125 CNV gain 18304495
nsv945466 CNV duplication 23825009

Variation tolerance for OR2T4 Gene

Residual Variation Intolerance Score: 99.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 25.67; 99.73% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OR2T4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR2T4
Leiden Open Variation Database (LOVD)
OR2T4

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR2T4 Gene

Disorders for OR2T4 Gene

MalaCards: The human disease database

(1) MalaCards diseases for OR2T4 Gene - From: COP

Disorder Aliases PubMed IDs
autosomal recessive non-syndromic intellectual disability
  • autosomal recessive mental retardation
- elite association - COSMIC cancer census association via MalaCards
Search OR2T4 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for OR2T4

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with OR2T4: view

No data available for UniProtKB/Swiss-Prot and Genatlas for OR2T4 Gene

Publications for OR2T4 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 4
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4

ExternalLinks

View latest publications for OR2T4 gene in Mastermind

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