Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone rec... See more...

Aliases for OR2F1 Gene

Aliases for OR2F1 Gene

  • Olfactory Receptor Family 2 Subfamily F Member 1 (Gene/Pseudogene) 2 3 5
  • Olfactory Receptor, Family 2, Subfamily F, Member 1 2 3
  • Olfactory Receptor-Like Protein OLF3 3 4
  • Olfactory Receptor 2F1 3 4
  • Olfactory Receptor 2F3 3 4
  • Olfactory Receptor 2F4 3 4
  • Olfactory Receptor 2F5 3 4
  • OR2F3P 3 4
  • OR2F3 3 4
  • OR2F4 3 4
  • OR2F5 3 4
  • OLF3 3 4
  • Olfactory Receptor, Family 2, Subfamily F, Member 1 (Gene/Pseudogene) 2
  • Olfactory Receptor, Family 2, Subfamily F, Member 3 3
  • Olfactory Receptor, Family 2, Subfamily F, Member 4 3
  • Olfactory Receptor, Family 2, Subfamily F, Member 5 3
  • Olfactory Receptor OR7-7 3
  • OR14-60 3
  • OR7-139 3
  • OR7-140 3
  • 7M1-2 3

External Ids for OR2F1 Gene

Previous HGNC Symbols for OR2F1 Gene

  • OR2F4
  • OR2F5
  • OR2F3
  • OR2F3P

Previous GeneCards Identifiers for OR2F1 Gene

  • GC07P141903
  • GC07P142971
  • GC07P143049
  • GC07P143050
  • GC07P143094
  • GC07P143287
  • GC07P143657
  • GC07P143959

Summaries for OR2F1 Gene

Entrez Gene Summary for OR2F1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. This olfactory receptor gene is a segregating pseudogene, where some individuals have an allele that encodes a functional olfactory receptor, while other individuals have an allele encoding a protein that is predicted to be non-functional. [provided by RefSeq, Jun 2015]

GeneCards Summary for OR2F1 Gene

OR2F1 (Olfactory Receptor Family 2 Subfamily F Member 1 (Gene/Pseudogene)) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory transduction. Gene Ontology (GO) annotations related to this gene include G protein-coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR2F2.

UniProtKB/Swiss-Prot Summary for OR2F1 Gene

Gene Wiki entry for OR2F1 Gene

Additional gene information for OR2F1 Gene

No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OR2F1 Gene

Genomics for OR2F1 Gene

GeneHancer (GH) Regulatory Elements for OR2F1 Gene

Promoters and enhancers for OR2F1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J143989 Enhancer 0.9 Ensembl ENCODE 11.7 +82.2 82204 0.7 CTBP1 NCOR1 NFIC TRIM24 TRIM28 PBX2 EHMT2 TAL1 NR2F1 STAT5A OR2F1 OR2A5 ARHGEF35 SLC16A1P1 lnc-OR6B1-2 piR-30350-059 lnc-OR2F1-1
GH07J143978 Enhancer 0.9 Ensembl ENCODE 12 +72.6 72575 2.6 TCF12 JUND EP300 CTBP1 CREB1 TRIM24 FOS NCOR1 FOSL2 CEBPB CAPZA1P5 ENSG00000270729 OR2Q1P lnc-TCAF1-1 OR2F1 OR2A25 OR2A41P ENSG00000253882 lnc-OR2F1-1
GH07J144018 Enhancer 0.9 Ensembl ENCODE 10.9 +113.0 112983 3.4 JUND FOS RFX1 CUX1 TEAD1 CTBP1 FOSL2 CEBPB JUN FOSL1 ARHGEF35 OR2A5 OR2F1 ENSG00000253882 lnc-OR6B1-1 HSALNG0061982
GH07J143933 Enhancer 0.8 Ensembl ENCODE 11.7 +28.3 28279 2.9 REST RFX1 FOXA2 ZNF316 MAFF MAFK ZFHX2 GATA3 JUND CEBPG OR2F2 ARHGEF35 OR2F1 TCAF1 OR2A7 lnc-OR2F1-1
GH07J143898 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 2.6 -4.0 -3970 9 EP300 FOXK2 HNRNPK ZNF217 CTCF ZSCAN5C NRF1 POLR2G SP1 NCOR1 TCAF1 ARHGEF35 CASP2 OR2A13P OR2A25 OR2A12 ARHGEF34P OR2A2 OR2F1 LOC105375549
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OR2F1 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for OR2F1

Top Transcription factor binding sites by QIAGEN in the OR2F1 gene promoter:
  • GATA-1
  • HOXA9
  • HOXA9B
  • Meis-1
  • Meis-1b
  • YY1

Genomic Locations for OR2F1 Gene

Genomic Locations for OR2F1 Gene
chr7:143,907,126-143,997,312
(GRCh38/hg38)
Size:
90,187 bases
Orientation:
Plus strand
chr7:143,657,020-143,658,108
(GRCh37/hg19)
Size:
1,089 bases
Orientation:
Plus strand

Genomic View for OR2F1 Gene

Genes around OR2F1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR2F1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR2F1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR2F1 Gene

Proteins for OR2F1 Gene

  • Protein details for OR2F1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q13607-OR2F1_HUMAN
    Recommended name:
    Olfactory receptor 2F1
    Protein Accession:
    Q13607
    Secondary Accessions:
    • A4D2G1
    • Q6IFP7
    • Q96R49
    • Q9UDX1

    Protein attributes for OR2F1 Gene

    Size:
    317 amino acids
    Molecular mass:
    35350 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR2F1 Gene

Post-translational modifications for OR2F1 Gene

  • Glycosylation at Asn5
  • Modification sites at PhosphoSitePlus

Other Protein References for OR2F1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR2F1 Gene

Domains & Families for OR2F1 Gene

Gene Families for OR2F1 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OR2F1 Gene

Blocks:
  • Olfactory receptor signature
InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for OR2F1 Gene

GenScript: Design optimal peptide antigens:
  • Olfactory receptor (O43886_HUMAN)
  • Olfactory receptor (O43887_HUMAN)
  • Olfactory receptor-like protein OLF3 (OR2F1_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q13607

UniProtKB/Swiss-Prot:

OR2F1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR2F1: view

Function for OR2F1 Gene

Molecular function for OR2F1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.
GENATLAS Biochemistry:
olfactory receptor,family 2,subfamily F,member 1,G protein coupled receptor superfamily

Gene Ontology (GO) - Molecular Function for OR2F1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G protein-coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR2F1: view
genes like me logo Genes that share phenotypes with OR2F1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OR2F1

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR2F1 Gene

Localization for OR2F1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR2F1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR2F1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR2F1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR2F1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR2F1 Gene

Pathways & Interactions for OR2F1 Gene

genes like me logo Genes that share pathways with OR2F1: view

Pathways by source for OR2F1 Gene

1 KEGG pathway for OR2F1 Gene

Interacting Proteins for OR2F1 Gene

;

Gene Ontology (GO) - Biological Process for OR2F1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction NAS 9500546
GO:0007186 G protein-coupled receptor signaling pathway IEA --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR2F1: view

No data available for SIGNOR curated interactions for OR2F1 Gene

Drugs & Compounds for OR2F1 Gene

No Compound Related Data Available

Transcripts for OR2F1 Gene

mRNA/cDNA for OR2F1 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OR2F1

Alternative Splicing Database (ASD) splice patterns (SP) for OR2F1 Gene

No ASD Table

Relevant External Links for OR2F1 Gene

GeneLoc Exon Structure for
OR2F1

Expression for OR2F1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OR2F1 Gene

mRNA differential expression in normal tissues according to GTEx for OR2F1 Gene

This gene is overexpressed in Testis (x19.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for OR2F1

SOURCE GeneReport for Unigene cluster for OR2F1 Gene:

Hs.553595
genes like me logo Genes that share expression patterns with OR2F1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR2F1 Gene

Orthologs for OR2F1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for OR2F1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC472567 30
  • 99.26 (n)
OR2F1 31
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LOC613799 30
  • 87.97 (n)
-- 31
  • 87 (a)
ManyToMany
-- 31
  • 86 (a)
ManyToMany
-- 31
  • 86 (a)
ManyToMany
-- 31
  • 85 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia LOC100687207 30
  • 87.91 (n)
-- 31
  • 87 (a)
ManyToMany
cOR13M4 31
  • 86 (a)
ManyToMany
-- 31
  • 85 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Or2f1b 47 Olfr38 31
  • 85 (a)
ManyToMany
Olfr452 31
  • 85 (a)
ManyToMany
Or2f1 47 Olfr453 17 31 30
  • 82.33 (n)
Or10ak11 47 Olfr1333
  • chr4:118,829,488-118,830,438
Or10ak14 47 Olfr1338
  • chr4:118,753,598-118,754,590
rat
(Rattus norvegicus)
Mammalia Olr806 30
  • 82.86 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 31
  • 79 (a)
ManyToMany
-- 31
  • 79 (a)
ManyToMany
-- 31
  • 77 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100485994 30
  • 54.49 (n)
Species where no ortholog for OR2F1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR2F1 Gene

ENSEMBL:
Gene Tree for OR2F1 (if available)
TreeFam:
Gene Tree for OR2F1 (if available)

Paralogs for OR2F1 Gene

(453) SIMAP similar genes for OR2F1 Gene using alignment to 2 proteins:

  • OR2F1_HUMAN
  • L8E9J5_HUMAN

Pseudogenes.org Pseudogenes for OR2F1 Gene

genes like me logo Genes that share paralogs with OR2F1: view

Variants for OR2F1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for OR2F1 Gene

SNP ID Clinical significance and condition Chr 07 pos Variation AA Info Type
rs2072164 - p.Arg122Cys
rs2072165 - p.His137Arg

Additional dbSNP identifiers (rs#s) for OR2F1 Gene

Structural Variations from Database of Genomic Variants (DGV) for OR2F1 Gene

Variant ID Type Subtype PubMed ID
dgv11664n54 CNV gain 21841781
dgv6725n100 CNV gain 25217958
dgv842n27 CNV gain 19166990
esv1682998 OTHER inversion 17803354
esv2422489 CNV duplication 17116639
esv2735282 CNV deletion 23290073
esv2752147 CNV gain 17911159
esv2759570 CNV gain+loss 17122850
esv3615313 CNV gain 21293372
esv3891223 CNV loss 25118596
nsv1016831 CNV gain 25217958
nsv428188 CNV gain+loss 18775914
nsv522225 CNV gain 19592680
nsv608682 CNV gain 21841781
nsv8227 CNV gain+loss 18304495
nsv831173 CNV gain 17160897
nsv970595 CNV duplication 23825009

Variation tolerance for OR2F1 Gene

Residual Variation Intolerance Score: 86.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.68; 86.43% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OR2F1 Gene

Human Gene Mutation Database (HGMD)
OR2F1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR2F1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR2F1 Gene

Disorders for OR2F1 Gene

Additional Disease Information for OR2F1

No disorders were found for OR2F1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR2F1 Gene

Publications for OR2F1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 54
  2. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 4 54
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 3 4 54
  4. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 3 4 54
  5. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T … Shamir R (Genomics 2002) 3 4 54

Products for OR2F1 Gene

Sources for OR2F1 Gene