Free for academic non-profit institutions. Other users need a Commercial license

Aliases for OR2A9P Gene

Aliases for OR2A9P Gene

  • Olfactory Receptor Family 2 Subfamily A Member 9 Pseudogene 2 3 5
  • Olfactory Receptor, Family 2, Subfamily A, Member 22 Pseudogene 3
  • Olfactory Receptor, Family 2, Subfamily A, Member 9 Pseudogene 2
  • Olfactory Receptor, Family 2, Subfamily A, Member 19 3
  • HSDJ0798C17 3
  • OR2A22P 3
  • FKSG35 3
  • OR2A19 3
  • OR2A9 3

External Ids for OR2A9P Gene

Previous HGNC Symbols for OR2A9P Gene

  • OR2A9

Previous GeneCards Identifiers for OR2A9P Gene

  • GC07U990171
  • GC07M143262
  • GC07M143339
  • GC07P143434
  • GC07P143627
  • GC07P143991

Summaries for OR2A9P Gene

Entrez Gene Summary for OR2A9P Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR2A9P Gene

OR2A9P (Olfactory Receptor Family 2 Subfamily A Member 9 Pseudogene) is a Pseudogene.

Additional gene information for OR2A9P Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR2A9P Gene

Genomics for OR2A9P Gene

GeneHancer (GH) Regulatory Elements for OR2A9P Gene

Promoters and enhancers for OR2A9P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I144293 Promoter 0.5 Ensembl 550.8 -0.1 -79 1.6 OR2A9P ARHGEF34P OR2A1-AS1 ENSG00000284644 LOC101928605
GH07I144292 Enhancer 0.2 FANTOM5 550.8 -1.8 -1815 0.3 OR2A9P ARHGEF5 ARHGEF34P OR2A1-AS1 ENSG00000284644 LOC101928605
GH07I144256 Enhancer 0.6 ENCODE 8.2 -38.2 -38197 0.2 ETV1 CEBPB MAFG MCM5 CEBPG ZNF148 FOSL1 JUND ATF4 IKZF1 OR2A20P CASP2 LOC154761 TCAF2 RN7SL535P OR2A9P OR2A7 LOC101928605 ENSG00000244198 ENSG00000284644
GH07I144407 Enhancer 0.4 ENCODE 4.8 +113.5 113484 1.8 ZNF335 CTBP1 RFX1 OR2A9P NOBOX OR2A1-AS1
GH07I144291 Enhancer 0.2 Ensembl 0.8 -2.9 -2879 0.4 ARHGEF34P OR2A9P OR2A1-AS1 ENSG00000284644 LOC101928605
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OR2A9P on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the OR2A9P gene promoter:

Genomic Locations for OR2A9P Gene

Genomic Locations for OR2A9P Gene
chr7:144,294,480-144,300,934
(GRCh38/hg38)
Size:
6,455 bases
Orientation:
Plus strand
chr7:143,991,573-143,998,027
(GRCh37/hg19)

Genomic View for OR2A9P Gene

Genes around OR2A9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR2A9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR2A9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR2A9P Gene

Proteins for OR2A9P Gene

Post-translational modifications for OR2A9P Gene

No Post-translational modifications

Other Protein References for OR2A9P Gene

HORDE protein sequence:

No data available for DME Specific Peptides for OR2A9P Gene

Domains & Families for OR2A9P Gene

Gene Families for OR2A9P Gene

Suggested Antigen Peptide Sequences for OR2A9P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with OR2A9P: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for OR2A9P Gene

Function for OR2A9P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR2A9P Gene

Localization for OR2A9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OR2A9P Gene

Pathways & Interactions for OR2A9P Gene

SuperPathways for OR2A9P Gene

No Data Available

Interacting Proteins for OR2A9P Gene

Gene Ontology (GO) - Biological Process for OR2A9P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OR2A9P Gene

Drugs & Compounds for OR2A9P Gene

No Compound Related Data Available

Transcripts for OR2A9P Gene

mRNA/cDNA for OR2A9P Gene

Unigene Clusters for OR2A9P Gene

Olfactory receptor, family 2, subfamily A, member 9 pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR2A9P Gene

No ASD Table

Relevant External Links for OR2A9P Gene

GeneLoc Exon Structure for
OR2A9P
ECgene alternative splicing isoforms for
OR2A9P

Expression for OR2A9P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR2A9P Gene

mRNA differential expression in normal tissues according to GTEx for OR2A9P Gene

This gene is overexpressed in Thyroid (x7.4).

NURSA nuclear receptor signaling pathways regulating expression of OR2A9P Gene:

OR2A9P

SOURCE GeneReport for Unigene cluster for OR2A9P Gene:

Hs.591830
genes like me logo Genes that share expression patterns with OR2A9P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR2A9P Gene

Orthologs for OR2A9P Gene

Evolution for OR2A9P Gene

ENSEMBL:
Gene Tree for OR2A9P (if available)
TreeFam:
Gene Tree for OR2A9P (if available)

No data available for Orthologs for OR2A9P Gene

Paralogs for OR2A9P Gene

No data available for Paralogs for OR2A9P Gene

Variants for OR2A9P Gene

Sequence variations from dbSNP and Humsavar for OR2A9P Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs113733834 -- 144,300,740(+) TGATAGTGAACGA/ downstream_transcript_variant
rs1208322 -- 144,300,948(+) G/A downstream_transcript_variant
rs201367685 -- 144,300,518(+) T/C downstream_transcript_variant
rs372956486 -- 144,300,869(+) C/A downstream_transcript_variant
rs542397849 -- 144,300,433(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for OR2A9P Gene

Variant ID Type Subtype PubMed ID
nsv608830 CNV loss 21841781
nsv608831 CNV loss 21841781
nsv608832 CNV loss 21841781
nsv608840 CNV loss 21841781
nsv7411 OTHER inversion 18451855
nsv819701 CNV insertion 19587683
nsv821609 CNV duplication 20802225
nsv8227 CNV gain+loss 18304495
nsv824360 CNV gain 20364138
nsv831175 CNV loss 17160897
nsv970599 CNV duplication 23825009
nsv981600 CNV duplication 23825009
nsv608829 CNV loss 21841781
nsv608826 CNV gain 21841781
nsv608764 CNV loss 21841781
nsv608699 CNV gain 21841781
nsv510970 OTHER inversion 20534489
nsv508489 CNV deletion 20534489
nsv471646 CNV gain+loss 15918152
nsv469769 CNV gain+loss 16826518
nsv433394 CNV gain 18776910
nsv428188 CNV gain+loss 18775914
nsv1153905 CNV duplication 26484159
nsv1141559 CNV duplication 24896259
nsv1133019 OTHER inversion 24896259
nsv1119235 CNV duplication 24896259
nsv1016831 CNV gain 25217958
esv8347 OTHER inversion 19470904
esv3891225 CNV gain 25118596
esv3584873 CNV loss 24956385
esv3432947 CNV duplication 20981092
esv3418550 CNV duplication 20981092
esv3412618 CNV duplication 20981092
esv3380478 CNV duplication 20981092
esv3379401 CNV duplication 20981092
esv3352897 CNV duplication 20981092
esv33253 CNV gain 17666407
esv2759570 CNV gain+loss 17122850
esv24292 CNV gain+loss 19812545
esv1682998 OTHER inversion 17803354
esv1003295 OTHER inversion 20482838
dgv6745n100 CNV loss 25217958
dgv6744n100 CNV loss 25217958
dgv6743n100 CNV gain+loss 25217958
dgv6742n100 CNV loss 25217958
dgv6741n100 CNV loss 25217958
dgv6740n100 CNV loss 25217958
dgv6739n100 CNV gain+loss 25217958
dgv6738n100 CNV gain+loss 25217958
dgv6737n100 CNV gain 25217958
dgv6736n100 CNV gain 25217958
dgv6735n100 CNV gain 25217958
dgv6734n100 CNV gain+loss 25217958
dgv6733n100 CNV gain+loss 25217958
dgv6732n100 CNV gain+loss 25217958
dgv6731n100 CNV gain+loss 25217958
dgv6730n100 CNV loss 25217958
dgv6729n100 CNV gain 25217958
dgv6728n100 CNV gain+loss 25217958
dgv6727n100 CNV loss 25217958
dgv6726n100 CNV gain 25217958
dgv3975e59 CNV duplication 20981092
dgv3972e59 CNV duplication 20981092
dgv255n111 CNV deletion 26073780
dgv254n111 CNV duplication 26073780
dgv253n111 CNV duplication 26073780
dgv24n31 CNV gain 19718026
dgv152e203 CNV gain+loss 21179565
dgv11685n54 CNV loss 21841781
dgv11684n54 CNV loss 21841781
dgv11680n54 CNV loss 21841781
dgv11679n54 CNV loss 21841781
dgv11669n54 CNV loss 21841781
dgv11668n54 CNV gain 21841781

Additional Variant Information for OR2A9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR2A9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OR2A9P Gene

Disorders for OR2A9P Gene

Additional Disease Information for OR2A9P

No disorders were found for OR2A9P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR2A9P Gene

Publications for OR2A9P Gene

  1. Population differences in the human functional olfactory repertoire. (PMID: 12644552) Gilad Y … Lancet D (Molecular biology and evolution 2003) 3 58
  2. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T … Shamir R (Genomics 2002) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58
  5. Distribution of olfactory receptor genes in the human genome. (PMID: 9500546) Rouquier S … Giorgi D (Nature genetics 1998) 3 58

Products for OR2A9P Gene

Sources for OR2A9P Gene

Content
Loading form....