Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone rec... See more...

Aliases for OR13F1 Gene

Aliases for OR13F1 Gene

  • Olfactory Receptor Family 13 Subfamily F Member 1 2 3 5
  • Olfactory Receptor OR9-6 3 4
  • Olfactory Receptor 13F1 3 4
  • Olfactory Receptor, Family 13, Subfamily F, Member 1 2
  • OR13F1 5
  • OR9-6 3

External Ids for OR13F1 Gene

Previous GeneCards Identifiers for OR13F1 Gene

  • GC09U990153
  • GC09P102639
  • GC09P104346
  • GC09P106306
  • GC09P107266

Summaries for OR13F1 Gene

Entrez Gene Summary for OR13F1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR13F1 Gene

OR13F1 (Olfactory Receptor Family 13 Subfamily F Member 1) is a Protein Coding gene. Diseases associated with OR13F1 include Tibial Muscular Dystrophy. Among its related pathways are Signaling by GPCR and Olfactory transduction. Gene Ontology (GO) annotations related to this gene include G protein-coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR5T1.

UniProtKB/Swiss-Prot Summary for OR13F1 Gene

Gene Wiki entry for OR13F1 Gene

Additional gene information for OR13F1 Gene

No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OR13F1 Gene

Genomics for OR13F1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for OR13F1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J104386 Enhancer 0.5 Ensembl 0.1 -118.0 -117962 0.6 CTCF RAD21 TRIM22 SMC3 GATA3 ZNF654 LOC105376195 LOC100128906 lnc-OR13C4-5 OR13F1 SMC2
GH09J104270 Enhancer 0.6 ENCODE 0.1 -233.8 -233828 0.1 REST SP1 CEBPA CEBPB FOXA2 YY1 HNF4A NFIL3 RXRA HLF LOC105376194 TOPORSLP piR-33998-012 SMC2 OR13F1
GH09J104231 Enhancer 0.7 FANTOM5 Ensembl ENCODE 0.1 -271.2 -271234 2.4 ATF2 MAFK piR-32861-081 piR-49423-287 SMC2 FJ601684-463 OR13F1
GH09J104280 Enhancer 0.5 Ensembl 0.1 -224.0 -223962 0.2 OSR2 KLF8 HIC1 JUND FEZF1 KLF16 LOC105376194 TOPORSLP piR-33998-012 SMC2 OR13F1
GH09J104256 Enhancer 0.3 Ensembl 0.1 -247.8 -247762 0.2 TRIM28 TOPORSLP piR-55083-004 SMC2 OR13F1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OR13F1 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for OR13F1

Top Transcription factor binding sites by QIAGEN in the OR13F1 gene promoter:
  • AP-1
  • ATF-2
  • c-Jun
  • Evi-1
  • HNF-3beta
  • NF-AT
  • POU2F1
  • POU2F1a
  • RORalpha1

Genomic Locations for OR13F1 Gene

Genomic Locations for OR13F1 Gene
chr9:104,504,263-104,505,222
(GRCh38/hg38)
Size:
960 bases
Orientation:
Plus strand
chr9:107,266,455-107,267,547
(GRCh37/hg19)
Size:
1,093 bases
Orientation:
Plus strand

Genomic View for OR13F1 Gene

Genes around OR13F1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR13F1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR13F1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR13F1 Gene

Proteins for OR13F1 Gene

  • Protein details for OR13F1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGS4-O13F1_HUMAN
    Recommended name:
    Olfactory receptor 13F1
    Protein Accession:
    Q8NGS4
    Secondary Accessions:
    • B9EIM5
    • Q6IF50

    Protein attributes for OR13F1 Gene

    Size:
    319 amino acids
    Molecular mass:
    35646 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR13F1 Gene

Post-translational modifications for OR13F1 Gene

  • Glycosylation at Asn5
  • Modification sites at PhosphoSitePlus

Other Protein References for OR13F1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR13F1 Gene

Domains & Families for OR13F1 Gene

Gene Families for OR13F1 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OR13F1 Gene

InterPro:
Blocks:
  • Olfactory receptor signature
ProtoNet:

Suggested Antigen Peptide Sequences for OR13F1 Gene

GenScript: Design optimal peptide antigens:
  • Olfactory receptor, family 13, subfamily F, member 1 (B9EIM5_HUMAN)
  • Olfactory receptor OR9-6 (O13F1_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q8NGS4

UniProtKB/Swiss-Prot:

O13F1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR13F1: view

Function for OR13F1 Gene

Molecular function for OR13F1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Phenotypes From GWAS Catalog for OR13F1 Gene

Gene Ontology (GO) - Molecular Function for OR13F1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001591 dopamine neurotransmitter receptor activity, coupled via Gi/Go IBA --
GO:0004930 G protein-coupled receptor activity IEA,IBA 21873635
GO:0004935 adrenergic receptor activity IBA --
GO:0004984 olfactory receptor activity IEA --
GO:0035240 dopamine binding IBA --
genes like me logo Genes that share ontologies with OR13F1: view

Phenotypes for OR13F1 Gene

genes like me logo Genes that share phenotypes with OR13F1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OR13F1

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR13F1 Gene

Localization for OR13F1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR13F1 Gene

Cell membrane. Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR13F1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR13F1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005623 cell IEA --
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane IBA 21873635
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR13F1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR13F1 Gene

Pathways & Interactions for OR13F1 Gene

genes like me logo Genes that share pathways with OR13F1: view

Pathways by source for OR13F1 Gene

Interacting Proteins for OR13F1 Gene

STRING Interaction Network Preview (showing top 5 STRING interactants - click image to see top 23)
STRING Interaction Network
Selected Interacting proteins: ENSP00000334452 Q8NGS4-O13F1_HUMAN for OR13F1 Gene via STRING IID

Gene Ontology (GO) - Biological Process for OR13F1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001963 synaptic transmission, dopaminergic IBA --
GO:0007165 signal transduction IEA --
GO:0007186 G protein-coupled receptor signaling pathway IEA --
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway IBA --
GO:0007194 negative regulation of adenylate cyclase activity IBA --
genes like me logo Genes that share ontologies with OR13F1: view

No data available for SIGNOR curated interactions for OR13F1 Gene

Drugs & Compounds for OR13F1 Gene

No Compound Related Data Available

Transcripts for OR13F1 Gene

mRNA/cDNA for OR13F1 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OR13F1

Alternative Splicing Database (ASD) splice patterns (SP) for OR13F1 Gene

No ASD Table

Relevant External Links for OR13F1 Gene

GeneLoc Exon Structure for
OR13F1

Expression for OR13F1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OR13F1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for OR13F1

SOURCE GeneReport for Unigene cluster for OR13F1 Gene:

Hs.553602
genes like me logo Genes that share expression patterns with OR13F1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR13F1 Gene

Orthologs for OR13F1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR13F1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC473000 30
  • 97.6 (n)
OR13F1 31
  • 96 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia OR13F1 30 31
  • 85.93 (n)
OneToMany
-- 31
  • 82 (a)
OneToMany
Cow
(Bos Taurus)
Mammalia OR13F1 30
  • 83.77 (n)
-- 31
  • 80 (a)
OneToMany
-- 31
  • 77 (a)
OneToMany
Rat
(Rattus norvegicus)
Mammalia Olr841 30
  • 83.07 (n)
Mouse
(Mus musculus)
Mammalia Or13f5 46 Olfr275 30 17 31
  • 82.24 (n)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia -- 31
  • 69 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia -- 31
  • 49 (a)
ManyToMany
Species where no ortholog for OR13F1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for OR13F1 Gene

ENSEMBL:
Gene Tree for OR13F1 (if available)
TreeFam:
Gene Tree for OR13F1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for OR13F1: view image

Paralogs for OR13F1 Gene

(452) SIMAP similar genes for OR13F1 Gene using alignment to 2 proteins:

  • O13F1_HUMAN
  • B9EIM5_HUMAN
genes like me logo Genes that share paralogs with OR13F1: view

Variants for OR13F1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for OR13F1 Gene

SNP ID Clinical significance and condition Chr 09 pos Variation AA Info Type
rs1403811 - p.Val134Ile
rs1403812 - p.Met101Val
rs7018553 - p.Phe94Ser
rs7030820 - p.Thr254Met
rs7049042 - p.Phe18Ser

Additional dbSNP identifiers (rs#s) for OR13F1 Gene

Structural Variations from Database of Genomic Variants (DGV) for OR13F1 Gene

Variant ID Type Subtype PubMed ID
esv3891705 CNV loss 25118596
esv3891706 CNV gain 25118596
nsv615067 CNV loss 21841781

Variation tolerance for OR13F1 Gene

Residual Variation Intolerance Score: 88.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.10; 84.53% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OR13F1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR13F1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR13F1 Gene

Disorders for OR13F1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for OR13F1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
tibial muscular dystrophy
  • tibial muscular dystrophy, tardive
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for OR13F1

genes like me logo Genes that share disorders with OR13F1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for OR13F1 Gene

Publications for OR13F1 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 4
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3 4
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for OR13F1 Gene

Sources for OR13F1 Gene