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OR13D2P Gene(Pseudogene)

Olfactory Receptor Family 13 Subfamily D Member 2 Pseudogene

GCID:
GC09P104590
GIFtS:
10
Genes Participants
UDN Logo

Aliases for OR13D2P Gene

Subcategory (RNA class) for OR13D2P Gene

lncRNA

Aliases for OR13D2P Gene

  • Olfactory Receptor Family 13 Subfamily D Member 2 Pseudogene 2 3 5
  • Olfactory Receptor, Family 13, Subfamily D, Member 2 Pseudogene 2

External Ids for OR13D2P Gene

ORGUL Members for OR13D2P Gene

Previous GeneCards Identifiers for OR13D2P Gene

  • GC09U990179
  • GC09P102732
  • GC09P104431
  • GC09P106392
  • GC09P107353

Summaries for OR13D2P Gene

Entrez Gene Summary for OR13D2P Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR13D2P Gene

OR13D2P (Olfactory Receptor Family 13 Subfamily D Member 2 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for OR13D2P Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR13D2P Gene

Genomics for OR13D2P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for OR13D2P Gene

Promoters and enhancers for OR13D2P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09I104599 Promoter 0.5 EPDnew 0.4 +9.4 9369 0.1 OR13C5 OR13D2P
GH09I104586 Enhancer 0.2 ENCODE 0.8 -3.3 -3322 0.2 NIPSNAP3A OR13C3 OR13D1 OR13D2P OR13C8
GH09I104569 Promoter 0.5 EPDnew 0.3 -20.8 -20804 0.1 OR13C8 NIPSNAP3A OR13D2P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OR13D2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for OR13D2P Gene

Genomic Locations for OR13D2P Gene
chr9:104,590,017-104,590,951
(GRCh38/hg38)
Size:
935 bases
Orientation:
Plus strand
chr9:107,352,298-107,353,232
(GRCh37/hg19)

Genomic View for OR13D2P Gene

Genes around OR13D2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR13D2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR13D2P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for OR13D2P Gene

Proteins for OR13D2P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for OR13D2P Gene

No Post-translational modifications

Other Protein References for OR13D2P Gene

HORDE protein sequence:

No data available for DME Specific Peptides for OR13D2P Gene

Domains & Families for OR13D2P Gene

Gene Families for OR13D2P Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with OR13D2P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OR13D2P Gene

Function for OR13D2P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR13D2P Gene

Localization for OR13D2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OR13D2P Gene

Pathways & Interactions for OR13D2P Gene

SuperPathways for OR13D2P Gene

PathCards logo More details on SuperPathways for OR13D2P
No Data Available

Interacting Proteins for OR13D2P Gene

Gene Ontology (GO) - Biological Process for OR13D2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OR13D2P Gene

Drugs & Compounds for OR13D2P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for OR13D2P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for OR13D2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR13D2P Gene

No ASD Table

Relevant External Links for OR13D2P Gene

GeneLoc Exon Structure for
OR13D2P
ECgene alternative splicing isoforms for
OR13D2P

Expression for OR13D2P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR13D2P Gene

mRNA expression in normal human tissues for OR13D2P Gene
mRNA expression by GTEx for OR13D2P Gene

NURSA nuclear receptor signaling pathways regulating expression of OR13D2P Gene:

OR13D2P
genes like me logo Genes that share expression patterns with OR13D2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR13D2P Gene

Orthologs for OR13D2P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for OR13D2P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
 Mammalia Or13p3 51 Olfr1341
  • chr4:118,709,409-118,710,344
Or13p5 51 Olfr1339
  • chr4:118,734,531-118,735,475
Species where no ortholog for OR13D2P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR13D2P Gene

ENSEMBL:
Gene Tree for OR13D2P (if available)
TreeFam:
Gene Tree for OR13D2P (if available)

Paralogs for OR13D2P Gene

No data available for Paralogs for OR13D2P Gene

Variants for OR13D2P Gene

Additional Variant Information for OR13D2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR13D2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OR13D2P Gene

Disorders for OR13D2P Gene

No disorders were found for OR13D2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for OR13D2P Gene

Publications for OR13D2P Gene

No publications were found for OR13D2P Gene.

Products for OR13D2P Gene

Sources for OR13D2P Gene

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