Aliases for OPCML-IT1 Gene

Data sources for OPCML-IT1 Gene:

Subcategory (RNA class) for OPCML-IT1 Gene

lncRNA

Aliases for OPCML-IT1 Gene

External Ids for OPCML-IT1 Gene

Previous GeneCards Identifiers for OPCML-IT1 Gene

  • GC00U933301
  • GC11M133230

Summaries for OPCML-IT1 Gene

GeneCards Summary for OPCML-IT1 Gene

OPCML-IT1 (OPCML Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for OPCML-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OPCML-IT1 Gene

Genomics for OPCML-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for OPCML-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J133387 Enhancer 0.7 UCNEbase Ensembl 0.3 -20.0 -20020 2.6 GATA2 SPI1 MTA2 lnc-JAM3-9 OPCML-IT1 HSALNG0088326 OPCML
GH11J133360 Enhancer 0.4 Ensembl 0.4 +5.5 5480 0.8 EBF1 IKZF1 NR2F1 ZNF687 HSALNG0088326 OPCML-IT1 lnc-SPATA19-5 ENSG00000279189 OPCML
GH11J133372 Enhancer 0.2 Ensembl 0.4 -6.7 -6720 0.4 OPCML-IT1 HSALNG0088326 lnc-JAM3-9 OPCML
GH11J133377 Enhancer 0.2 Ensembl 0.4 -11.1 -11120 0.4 OPCML-IT1 HSALNG0088326 lnc-JAM3-9 OPCML
GH11J133390 Enhancer 0.2 VISTA 0.3 -25.0 -24959 0.9 lnc-JAM3-9 OPCML-IT1 OPCML
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OPCML-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for OPCML-IT1 Gene

Latest Assembly
chr11:133,360,028-133,366,081
(GRCh38/hg38)
Size:
6,054 bases
Orientation:
Minus strand

Previous Assembly
chr11:133,229,924-133,235,975
(GRCh37/hg19 by Ensembl)
Size:
6,052 bases
Orientation:
Minus strand

Genomic View for OPCML-IT1 Gene

Genes around OPCML-IT1 on UCSC Golden Path with GeneCards custom track
OPCML-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
OPCML-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OPCML-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for OPCML-IT1 Gene

Proteins for OPCML-IT1 Gene

Post-translational modifications for OPCML-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OPCML-IT1 Gene

Domains & Families for OPCML-IT1 Gene

Gene Families for OPCML-IT1 Gene

genes like me logo Genes that share domains with OPCML-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for OPCML-IT1 Gene

Function for OPCML-IT1 Gene

Phenotypes From GWAS Catalog for OPCML-IT1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OPCML-IT1 Gene

Localization for OPCML-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OPCML-IT1 Gene

Pathways & Interactions for OPCML-IT1 Gene

PathCards logo

SuperPathways for OPCML-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for OPCML-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for OPCML-IT1 Gene

Drugs & Compounds for OPCML-IT1 Gene

No Compound Related Data Available

Transcripts for OPCML-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for OPCML-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000359106_9606 lncRNA 2936 4

Ensembl: ENST00000533859 (view in UCSC) ,

LncBook: HSALNT0183712,

LNCipedia: OPCML-IT1:1,

NONCODE: NONHSAT025206.2,

URS00009BC2C5_9606 lncRNA 2936 2

LncBook: HSALNT0183713,

NONCODE: NONHSAT160932.1,

URS0001BD9A1B_9606 lncRNA 2936 1

LncBook: HSALNT0183713,

URS0001BE5DEF_9606 lncRNA 2936 1

LncBook: HSALNT0183712,

OPCML-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for OPCML-IT1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for OPCML-IT1 Gene

No ASD Table

Relevant External Links for OPCML-IT1 Gene

GeneLoc Exon Structure for
OPCML-IT1

Expression for OPCML-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OPCML-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for OPCML-IT1 Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x10.5), Brain - Cortex (x7.5), Brain - Frontal Cortex (BA9) (x7.3), and Brain - Hippocampus (x6.9).
genes like me logo Genes that share expression patterns with OPCML-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OPCML-IT1 Gene

Orthologs for OPCML-IT1 Gene

Evolution for OPCML-IT1 Gene

ENSEMBL:
Gene Tree for OPCML-IT1 (if available)
TreeFam:
Gene Tree for OPCML-IT1 (if available)

No data available for Orthologs for OPCML-IT1 Gene

Paralogs for OPCML-IT1 Gene

No data available for Paralogs for OPCML-IT1 Gene

Variants for OPCML-IT1 Gene

Additional Variant Information for OPCML-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OPCML-IT1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OPCML-IT1 Gene

Disorders for OPCML-IT1 Gene

Additional Disease Information for OPCML-IT1

No disorders were found for OPCML-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OPCML-IT1 Gene

Publications for OPCML-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for OPCML-IT1 Gene

Sources for OPCML-IT1 Gene