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Aliases for OPCML-IT1 Gene
Data sources for OPCML-IT1 Gene:
Subcategory (RNA class) for OPCML-IT1 Gene
lncRNA
Aliases for OPCML-IT1 Gene
- OPCML Intronic Transcript 1 (HGNC, NCBI Entrez Gene, Ensembl)
- OPCML Intronic Transcript 1 (Non-Protein Coding) (HGNC, NCBI Entrez Gene)
- OPCML-IT1 (Ensembl, LNCipedia)
- NONHSAG010088.2 (NONCODE)
- HSALNG0088325 (LncBook)
External Ids for OPCML-IT1 Gene
- HGNC: 41366
- NCBI Entrez Gene: 100874333
- Ensembl: ENSG00000254896
Previous GeneCards Identifiers for OPCML-IT1 Gene
- GC00U933301
- GC11M133230
Summaries for OPCML-IT1 Gene
GeneCards Summary for OPCML-IT1 Gene
OPCML-IT1 (OPCML Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for OPCML-IT1 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OPCML-IT1 Gene
Genomics for OPCML-IT1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for OPCML-IT1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J133387 | Enhancer | 0.7 | UCNEbase Ensembl | 0.3 | -20.0 | -20020 | 2.6 | GATA2 SPI1 MTA2 | lnc-JAM3-9 OPCML-IT1 HSALNG0088326 OPCML | |
| GH11J133360 | Enhancer | 0.4 | Ensembl | 0.4 | +5.5 | 5480 | 0.8 | EBF1 IKZF1 NR2F1 ZNF687 | HSALNG0088326 OPCML-IT1 lnc-SPATA19-5 ENSG00000279189 OPCML | |
| GH11J133372 | Enhancer | 0.2 | Ensembl | 0.4 | -6.7 | -6720 | 0.4 | OPCML-IT1 HSALNG0088326 lnc-JAM3-9 OPCML | ||
| GH11J133377 | Enhancer | 0.2 | Ensembl | 0.4 | -11.1 | -11120 | 0.4 | OPCML-IT1 HSALNG0088326 lnc-JAM3-9 OPCML | ||
| GH11J133390 | Enhancer | 0.2 | VISTA | 0.3 | -25.0 | -24959 | 0.9 | lnc-JAM3-9 OPCML-IT1 OPCML |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around OPCML-IT1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for OPCML-IT1 Gene
Latest Assembly
- chr11:133,360,028-133,366,081
- (GRCh38/hg38)
- Size:
- 6,054 bases
- Orientation:
- Minus strand
Previous Assembly
- chr11:133,229,924-133,235,975
- (GRCh37/hg19 by Ensembl)
- Size:
- 6,052 bases
- Orientation:
- Minus strand
Genomic View for OPCML-IT1 Gene
Genes around OPCML-IT1 on UCSC Golden Path with GeneCards custom track
OPCML-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q25 by HGNC
- 11q25 by Entrez Gene
- 11q25 by Ensembl
OPCML-IT1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for OPCML-IT1 Gene
Proteins for OPCML-IT1 Gene
Post-translational modifications for OPCML-IT1 Gene
No Post-translational modifications
No data available for DME Specific Peptides for OPCML-IT1 Gene
Domains & Families for OPCML-IT1 Gene
Gene Families for OPCML-IT1 Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for OPCML-IT1 Gene
Function for OPCML-IT1 Gene
Phenotypes From GWAS Catalog for OPCML-IT1 Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for OPCML-IT1 - Starting at $85 >
- * OPCML-IT1 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for OPCML-IT1 - Starting at $45 >
- * OPCML-IT1 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OPCML-IT1 Gene
Localization for OPCML-IT1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OPCML-IT1 Gene
Transcripts for OPCML-IT1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for OPCML-IT1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000359106_9606 | lncRNA | 2936 | 4 |
Ensembl: ENST00000533859 (view in UCSC) , LncBook: HSALNT0183712, LNCipedia: OPCML-IT1:1, NONCODE: NONHSAT025206.2, |
| URS00009BC2C5_9606 | lncRNA | 2936 | 2 |
LncBook: HSALNT0183713, NONCODE: NONHSAT160932.1, |
| URS0001BD9A1B_9606 | lncRNA | 2936 | 1 |
LncBook: HSALNT0183713, |
| URS0001BE5DEF_9606 | lncRNA | 2936 | 1 |
LncBook: HSALNT0183712, |
OPCML-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for OPCML-IT1 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for OPCML-IT1 - Starting at $85 >
- * OPCML-IT1 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for OPCML-IT1 - Starting at $45 >
- * OPCML-IT1 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Relevant External Links for OPCML-IT1 Gene
- GeneLoc Exon Structure for
- OPCML-IT1
Expression for OPCML-IT1 Gene
mRNA differential expression in normal tissues according to GTEx for OPCML-IT1 Gene
This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x10.5), Brain - Cortex (x7.5), Brain - Frontal Cortex (BA9) (x7.3), and Brain - Hippocampus (x6.9).
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OPCML-IT1 Gene
Orthologs for OPCML-IT1 Gene
No data available for Orthologs for OPCML-IT1 Gene
Paralogs for OPCML-IT1 Gene
No data available for Paralogs for OPCML-IT1 Gene
Variants for OPCML-IT1 Gene
Additional Variant Information for OPCML-IT1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- OPCML-IT1
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OPCML-IT1 Gene
Disorders for OPCML-IT1 Gene
Additional Disease Information for OPCML-IT1
No disorders were found for OPCML-IT1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OPCML-IT1 Gene
Publications for OPCML-IT1 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
Products for OPCML-IT1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for OPCML-IT1
- Origene Custom Protein Services for OPCML-IT1
- Browse OriGene Inhibitory RNA Products For OPCML-IT1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for OPCML-IT1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For OPCML-IT1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for OPCML-IT1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for OPCML-IT1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for OPCML-IT1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for OPCML-IT1
Sources for OPCML-IT1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB