OPCML Gene (Protein Coding)

Opioid Binding Protein/Cell Adhesion Molecule Like

GC11M132405
GIFtS:
43
This gene encodes a member of the IgLON subfamily in the immunoglobulin protein superfamily of proteins. The encoded preprotein is proteolytically processed to generate the mature protein. This protein is localized in the plasma membrane and may have an accessory role in opioid receptor function. This gene has an ortholog in rat and bovine. The opioid binding-cell adhesion mole... See more...

Aliases for OPCML Gene

Aliases for OPCML Gene

  • Opioid Binding Protein/Cell Adhesion Molecule Like 2 3 5
  • IgLON Family Member 1 2 3 4
  • IGLON1 2 3 4
  • OBCAM 2 3 4
  • Opioid-Binding Protein/Cell Adhesion Molecule 3 4
  • OPCM 2 3
  • Opioid Binding Protein/Cell Adhesion Molecule-Like Preprotein 3
  • Opioid-Binding Cell Adhesion Molecule 4
  • OPCML 5

External Ids for OPCML Gene

Previous GeneCards Identifiers for OPCML Gene

  • GC11M134422
  • GC11M133802
  • GC11M132321
  • GC11M131825
  • GC11M131790
  • GC11M128240
  • GC11M132414

Summaries for OPCML Gene

Entrez Gene Summary for OPCML Gene

  • This gene encodes a member of the IgLON subfamily in the immunoglobulin protein superfamily of proteins. The encoded preprotein is proteolytically processed to generate the mature protein. This protein is localized in the plasma membrane and may have an accessory role in opioid receptor function. This gene has an ortholog in rat and bovine. The opioid binding-cell adhesion molecule encoded by the rat gene binds opioid alkaloids in the presence of acidic lipids, exhibits selectivity for mu ligands and acts as a GPI-anchored protein. Since the encoded protein is highly conserved in species during evolution, it may have a fundamental role in mammalian systems. Alternative splicing results in multiple transcript variants, at least one of which encodes an isoform that is proteolytically processed. [provided by RefSeq, Jan 2016]

GeneCards Summary for OPCML Gene

OPCML (Opioid Binding Protein/Cell Adhesion Molecule Like) is a Protein Coding gene. Diseases associated with OPCML include Ovarian Cancer and Hypogonadotropic Hypogonadism 14 With Or Without Anosmia. Among its related pathways are Metabolism of proteins and Post-translational modification- synthesis of GPI-anchored proteins. Gene Ontology (GO) annotations related to this gene include opioid receptor activity. An important paralog of this gene is NTM.

UniProtKB/Swiss-Prot Summary for OPCML Gene

  • Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Gene Wiki entry for OPCML Gene

Additional gene information for OPCML Gene

No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OPCML Gene

Genomics for OPCML Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for OPCML Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J133532 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 250.7 +0.4 434 1.4 EGR1 POLR2A RAD21 KDM1A ENSG00000287068 OPCML HSALNG0088328
GH11J132943 Promoter 1 EPDnew Ensembl 250 +588.7 588734 1.6 CTCF BHLHE40 EZH2 RAD21 BACH1 lnc-SPATA19-8 OPCML piR-50444-072
GH11J134252 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 16.9 -720.8 -720767 3.4 CHD2 TBP ZBTB10 SP1 MXD4 SIX5 NR2C1 MNT SMAD5 ETS1 ACAD8 THYN1 HSALNG0088371 lnc-NCAPD3-3 OPCML GLB1L3 B3GAT1 LINC02731 GLB1L2 NCAPD3
GH11J133505 Enhancer 0.6 Ensembl 11.7 +26.0 26033 2.2 IRF4 EBF1 IKZF1 MTA3 BMI1 NR2F1 ATF2 ZNF217 TBL1XR1 SPI1 OPCML ENSG00000287068 HSALNG0088328
GH11J133441 Enhancer 0.6 Ensembl ENCODE 11.3 +89.4 89433 2.6 HNF4A POU5F1 NANOG RXRA OPCML HSALNG0088328 ENSG00000287068
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OPCML on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for OPCML

Top Transcription factor binding sites by QIAGEN in the OPCML gene promoter:
  • AP-4
  • c-Myb
  • Nkx2-5
  • Pax-6
  • RFX1
  • RORalpha1
  • S8
  • SEF-1 (1)
  • TBP

Genomic Locations for OPCML Gene

Latest Assembly
chr11:132,403,361-133,532,534
(GRCh38/hg38)
Size:
1,129,174 bases
Orientation:
Minus strand

Previous Assembly
chr11:132,284,559-133,402,396
(GRCh37/hg19 by Entrez Gene)
Size:
1,117,838 bases
Orientation:
Minus strand

chr11:132,284,871-133,402,414
(GRCh37/hg19 by Ensembl)
Size:
1,117,544 bases
Orientation:
Minus strand

Genomic View for OPCML Gene

Genes around OPCML on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OPCML Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OPCML Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for OPCML Gene

Proteins for OPCML Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

  • Protein details for OPCML Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q14982-OPCM_HUMAN
    Recommended name:
    Opioid-binding protein/cell adhesion molecule
    Protein Accession:
    Q14982
    Secondary Accessions:
    • B2CZX2
    • B7ZLQ1
    • Q17RN7
    • Q7Z3W6

    Protein attributes for OPCML Gene

    Size:
    345 amino acids
    Molecular mass:
    38008 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for OPCML Gene

    Alternative splice isoforms for OPCML Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for OPCML Gene

Protein Expression for OPCML Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for OPCML Gene

  • Glycosylation at Asn44, Asn70, Asn140, Asn285, Asn293, and Asn306
  • Modification sites at PhosphoSitePlus

Other Protein References for OPCML Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for OPCML Gene

Domains & Families for OPCML Gene

Gene Families for OPCML Gene

HGNC:
Human Protein Atlas (HPA):
  • Disease related genes
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for OPCML Gene

InterPro:
Blocks:
  • Immunoglobulin C-2 type
  • Immunoglobulin I-set
ProtoNet:

Suggested Antigen Peptide Sequences for OPCML Gene

GenScript: Design optimal peptide antigens:
  • cDNA FLJ76211, highly similar to Homo sapiens opioid binding protein/cell adhesion molecule-like(OPCML), mRNA (A8K0Y0_HUMAN)
  • cDNA, FLJ79390, highly similar to Opioid-binding protein/cell adhesion molecule (B2CZX2_HUMAN)
  • cDNA, FLJ79172, highly similar to Opioid-binding protein/cell adhesion moleculeprecursor (B2CZX3_HUMAN)
  • cDNA FLJ51061, highly similar to Opioid-binding protein/cell adhesion molecule (B4DS15_HUMAN)
  • OPCML protein (B7ZLQ0_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q14982

UniProtKB/Swiss-Prot:

OPCM_HUMAN :
  • Belongs to the immunoglobulin superfamily. IgLON family.
Family:
  • Belongs to the immunoglobulin superfamily. IgLON family.
genes like me logo Genes that share domains with OPCML: view

Function for OPCML Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Molecular function for OPCML Gene

UniProtKB/Swiss-Prot Function:
Binds opioids in the presence of acidic lipids; probably involved in cell contact.
GENATLAS Biochemistry:
opioid binding cell adhesion molecule

Phenotypes From GWAS Catalog for OPCML Gene

Gene Ontology (GO) - Molecular Function for OPCML Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 32296183
genes like me logo Genes that share ontologies with OPCML: view
genes like me logo Genes that share phenotypes with OPCML: view

Human Phenotype Ontology for OPCML Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for OPCML Gene

MGI Knock Outs for OPCML:

Animal Models for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OPCML

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for OPCML Gene

Localization for OPCML Gene

Subcellular locations from UniProtKB/Swiss-Prot for OPCML Gene

Cell membrane. Lipid-anchor, GPI-anchor.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OPCML gene
Compartment Confidence
plasma membrane 4
extracellular 4
cytoskeleton 1
mitochondrion 1
nucleus 1
endosome 1
cytosol 1

Gene Ontology (GO) - Cellular Components for OPCML Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0031225 anchored component of membrane IEA --
genes like me logo Genes that share ontologies with OPCML: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OPCML Gene

Pathways & Interactions for OPCML Gene

genes like me logo Genes that share pathways with OPCML: view

Gene Ontology (GO) - Biological Process for OPCML Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007155 cell adhesion TAS,IEA --
GO:0008038 neuron recognition TAS 7891157
genes like me logo Genes that share ontologies with OPCML: view

No data available for SIGNOR curated interactions for OPCML Gene

Drugs & Compounds for OPCML Gene

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(1) Drugs for OPCML Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Methylphenidate Approved, Investigational Pharma 441
genes like me logo Genes that share compounds with OPCML: view

Transcripts for OPCML Gene

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  1. CRISPR products for research
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  3. Inhibitory RNAs for research
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mRNA/cDNA for OPCML Gene

6 REFSEQ mRNAs :
27 NCBI additional mRNA sequence :
8 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for OPCML

Alternative Splicing Database (ASD) splice patterns (SP) for OPCML Gene

No ASD Table

Relevant External Links for OPCML Gene

GeneLoc Exon Structure for
OPCML

Expression for OPCML Gene

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  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OPCML Gene

mRNA expression in normal human tissues for OPCML Gene
mRNA expression by BioGPS for OPCML GenemRNA expression by GTEx for OPCML Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for OPCML Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x8.1), Brain - Frontal Cortex (BA9) (x7.3), Brain - Anterior cingulate cortex (BA24) (x6.8), Brain - Cerebellum (x6.4), and Brain - Cortex (x5.6).

Protein differential expression in normal tissues from HIPED for OPCML Gene

This gene is overexpressed in Cerebrospinal fluid (33.1), Frontal cortex (22.4), and Fetal Brain (10.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for OPCML Gene



Protein tissue co-expression partners for OPCML Gene

- Elite partner

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for OPCML

SOURCE GeneReport for Unigene cluster for OPCML Gene:

Hs.4817

Evidence on tissue expression from TISSUES for OPCML Gene

  • Nervous system(4.9)
  • Kidney(4.2)
  • Eye(2.1)
genes like me logo Genes that share expression patterns with OPCML: view

Primer products for research

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for OPCML Gene

Orthologs for OPCML Gene

This gene was present in the common ancestor of animals.

Orthologs for OPCML Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia OPCML 30 31
  • 99.81 (n)
 OneToOne
Dog
(Canis familiaris)
 Mammalia OPCML 30 31
  • 93.33 (n)
 OneToOne
Rat
(Rattus norvegicus)
 Mammalia Opcml 30
  • 92.66 (n)
Platypus
(Ornithorhynchus anatinus)
 Mammalia OPCML 31
  • 92 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia OPCML 30 31
  • 90.63 (n)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Opcml 30 17 31
  • 89.02 (n)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia OPCML 31
  • 88 (a)
 OneToOne
Chicken
(Gallus gallus)
 Aves OPCML 30 31
  • 79.46 (n)
 OneToOne
Lizard
(Anolis carolinensis)
 Reptilia OPCML 31
  • 82 (a)
 OneToOne
Tropical Clawed Frog
(Silurana tropicalis)
 Amphibia opcml 30
  • 74.25 (n)
Zebrafish
(Danio rerio)
 Actinopterygii opcml 30 31
  • 62.56 (n)
 OneToMany
African malaria mosquito
(Anopheles gambiae)
 Insecta AgaP_AGAP010222 30
  • 46.34 (n)
Fruit Fly
(Drosophila melanogaster)
 Insecta CG31646 30 31
  • 46.27 (n)
 ManyToMany
CG11320 31
  • 23 (a)
 ManyToMany
Lac 31
  • 23 (a)
 ManyToMany
Ama 31
  • 23 (a)
 ManyToMany
CG40378 31
  • 21 (a)
 ManyToMany
CG14521 31
  • 21 (a)
 ManyToMany
CG14010 31
  • 21 (a)
 ManyToMany
CG42368 31
  • 20 (a)
 ManyToMany
CG34391 31
  • 18 (a)
 ManyToMany
CG31708 31
  • 17 (a)
 ManyToMany
CG42343 31
  • 17 (a)
 ManyToMany
CG7166 31
  • 17 (a)
 ManyToMany
CG32791 31
  • 16 (a)
 ManyToMany
CG34353 31
  • 15 (a)
 ManyToMany
CG31814 31
  • 15 (a)
 ManyToMany
wrapper 31
  • 14 (a)
 ManyToMany
klg 31
  • 14 (a)
 ManyToMany
Worm
(Caenorhabditis elegans)
 Secernentea rig-5 31
  • 18 (a)
 OneToMany
Sea Squirt
(Ciona savignyi)
 Ascidiacea -- 31
  • 28 (a)
 OneToMany
Species where no ortholog for OPCML was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)

Evolution for OPCML Gene

ENSEMBL:
Gene Tree for OPCML (if available)
TreeFam:
Gene Tree for OPCML (if available)
Aminode:
Evolutionary constrained regions (ECRs) for OPCML: view image

Paralogs for OPCML Gene

Paralogs for OPCML Gene

(8) SIMAP similar genes for OPCML Gene using alignment to 6 proteins:

  • OPCM_HUMAN
  • A8K0Y0_HUMAN
  • B2CZX3_HUMAN
  • B7ZLQ0_HUMAN
  • B7ZLQ1_HUMAN
  • Q6B0I4_HUMAN
genes like me logo Genes that share paralogs with OPCML: view

Variants for OPCML Gene

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  1. SNP Genotyping and Copy Number Assays for research

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for OPCML Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
rs137852691 Pathogenic: Neoplasm of ovary. Ovarian cancer (OC) [MIM:167000] 132,657,203(-) G/Cp.Pro95Arg
NM_001319104.2(OPCML):c.-17C>G 		MISSENSE_VARIANT,FIVE_PRIME_UTR

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for OPCML Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for OPCML Gene

Variant ID Type Subtype PubMed ID
dgv1300n100 CNV gain 25217958
dgv158e201 CNV deletion 23290073
dgv2203n54 CNV gain 21841781
dgv237e214 CNV loss 21293372
dgv425e212 CNV loss 25503493
dgv426e212 CNV loss 25503493
dgv54e55 CNV gain 17911159
dgv740n106 CNV deletion 24896259
dgv741n106 CNV deletion 24896259
dgv85n21 CNV loss 19592680
esv1007109 CNV insertion 20482838
esv1010253 CNV deletion 20482838
esv1134786 CNV deletion 17803354
esv1173177 CNV insertion 17803354
esv1321885 CNV insertion 17803354
esv1528909 CNV insertion 17803354
esv2153700 CNV deletion 18987734
esv2195896 CNV deletion 18987734
esv2323872 CNV deletion 18987734
esv2337795 CNV deletion 18987734
esv2421631 CNV deletion 20811451
esv2471562 CNV insertion 19546169
esv2483165 CNV deletion 19546169
esv2582756 CNV insertion 19546169
esv2657031 CNV deletion 23128226
esv2657693 CNV deletion 23128226
esv2661740 CNV deletion 23128226
esv2666465 CNV deletion 23128226
esv2670789 CNV deletion 23128226
esv2672311 CNV deletion 23128226
esv2677127 CNV deletion 23128226
esv2745285 CNV deletion 23290073
esv2745287 CNV deletion 23290073
esv2745288 CNV deletion 23290073
esv2745289 CNV deletion 23290073
esv2745290 CNV deletion 23290073
esv2745291 CNV deletion 23290073
esv2745292 CNV deletion 23290073
esv2745293 CNV deletion 23290073
esv2745294 CNV deletion 23290073
esv2745295 CNV deletion 23290073
esv2745298 CNV deletion 23290073
esv2745300 CNV deletion 23290073
esv2745301 CNV deletion 23290073
esv2745302 CNV deletion 23290073
esv2745303 CNV deletion 23290073
esv2745304 CNV deletion 23290073
esv2745305 CNV deletion 23290073
esv2760510 CNV loss 21179565
esv2762952 CNV loss 21179565
esv3020 CNV loss 18987735
esv3310547 CNV novel sequence insertion 20981092
esv3389792 CNV duplication 20981092
esv3395897 CNV duplication 20981092
esv3426898 CNV insertion 20981092
esv3427501 CNV insertion 20981092
esv3548544 CNV deletion 23714750
esv3548549 CNV deletion 23714750
esv3548550 CNV deletion 23714750
esv3579981 CNV loss 25503493
esv3579984 CNV loss 25503493
esv3579985 CNV loss 25503493
esv3579986 CNV loss 25503493
esv3579987 CNV loss 25503493
esv3579990 CNV loss 25503493
esv3579991 CNV loss 25503493
esv3580161 CNV gain 25503493
esv3628125 CNV loss 21293372
esv3628127 CNV loss 21293372
esv3628128 CNV loss 21293372
esv3628129 CNV loss 21293372
esv3628131 CNV loss 21293372
esv3628133 CNV loss 21293372
esv3628134 CNV gain 21293372
esv3628135 CNV gain 21293372
esv3628138 CNV gain 21293372
esv3628139 CNV gain 21293372
esv3628140 CNV gain 21293372
esv3628141 CNV loss 21293372
esv3628142 CNV loss 21293372
esv3628143 CNV loss 21293372
esv3628147 CNV loss 21293372
esv3628148 CNV loss 21293372
esv3628149 CNV loss 21293372
esv4290 CNV loss 18987735
esv990417 CNV deletion 20482838
nsv1037943 CNV gain 25217958
nsv1042784 CNV loss 25217958
nsv1049431 CNV loss 25217958
nsv1054110 CNV loss 25217958
nsv1070076 CNV deletion 25765185
nsv1112613 CNV deletion 24896259
nsv1113450 CNV deletion 24896259
nsv1116688 CNV tandem duplication 24896259
nsv1120613 CNV deletion 24896259
nsv1127240 CNV deletion 24896259
nsv1129529 CNV tandem duplication 24896259
nsv1130514 CNV deletion 24896259
nsv1136142 CNV deletion 24896259
nsv1145576 CNV deletion 24896259
nsv1153685 CNV duplication 26484159
nsv39130 CNV insertion 16902084
nsv477518 CNV novel sequence insertion 20440878
nsv478844 CNV novel sequence insertion 20440878
nsv508662 CNV deletion 20534489
nsv510282 OTHER sequence alteration 20534489
nsv511010 OTHER complex 20534489
nsv513342 CNV insertion 21212237
nsv513343 CNV insertion 21212237
nsv513344 CNV insertion 21212237
nsv517407 CNV loss 19592680
nsv517552 CNV loss 19592680
nsv518815 CNV gain 19592680
nsv521504 CNV loss 19592680
nsv522776 CNV loss 19592680
nsv525431 CNV loss 19592680
nsv556589 CNV loss 21841781
nsv556592 CNV loss 21841781
nsv556593 CNV gain 21841781
nsv556594 CNV loss 21841781
nsv557 CNV deletion 18451855
nsv818873 CNV loss 17921354
nsv826138 CNV loss 20364138
nsv826139 CNV loss 20364138

Variation tolerance for OPCML Gene

Residual Variation Intolerance Score: 40.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.65; 13.95% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OPCML Gene

Human Gene Mutation Database (HGMD)
OPCML
SNPedia medical, phenotypic, and genealogical associations of SNPs for
OPCML

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OPCML Gene

Disorders for OPCML Gene

MalaCards: The human disease database

(3) MalaCards diseases for OPCML Gene - From: OMI, CVR, GTR, SWI, COP, and GCD

Disorder Aliases PubMed IDs
ovarian cancer
  • ovarian cancer, somatic
hypogonadotropic hypogonadism 14 with or without anosmia
  • hh14
jacobsen syndrome
  • jbs
- elite association - COSMIC cancer census association via MalaCards
Search OPCML in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

OPCM_HUMAN
  • Ovarian cancer (OC) [MIM:167000]: The term ovarian cancer defines malignancies originating from ovarian tissue. Although many histologic types of ovarian tumors have been described, epithelial ovarian carcinoma is the most common form. Ovarian cancers are often asymptomatic and the recognized signs and symptoms, even of late-stage disease, are vague. Consequently, most patients are diagnosed with advanced disease. {ECO:0000269 PubMed:12819783}. Note=Disease susceptibility is associated with variants affecting the gene represented in this entry.

Additional Disease Information for OPCML

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with OPCML: view

No data available for Genatlas for OPCML Gene

Publications for OPCML Gene

  1. OPCML at 11q25 is epigenetically inactivated and has tumor-suppressor function in epithelial ovarian cancer. (PMID: 12819783) Sellar GC … Gabra H (Nature genetics 2003) 3 4 23 74
  2. Cloning, sequencing and localization to chromosome 11 of a cDNA encoding a human opioid-binding cell adhesion molecule (OBCAM). (PMID: 7721093) Shark KB … Lee NM (Gene 1995) 3 4 23
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 41
  4. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 41
  5. Genome-wide association of sleep and circadian phenotypes. (PMID: 17903308) Gottlieb DJ … Wilk JB (BMC medical genetics 2007) 3 41

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