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Aliases for OPA1-AS1 Gene

Subcategory (RNA class) for OPA1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for OPA1-AS1 Gene

  • OPA1 Antisense RNA 1 2 3 5
  • OPA1 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for OPA1-AS1 Gene

Previous GeneCards Identifiers for OPA1-AS1 Gene

  • GC00U933583
  • GC03M193337

Summaries for OPA1-AS1 Gene

GeneCards Summary for OPA1-AS1 Gene

OPA1-AS1 (OPA1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for OPA1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OPA1-AS1 Gene

Genomics for OPA1-AS1 Gene

GeneHancer (GH) Regulatory Elements for OPA1-AS1 Gene

Promoters and enhancers for OPA1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OPA1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for OPA1-AS1 Gene

Genomic Locations for OPA1-AS1 Gene
chr3:193,618,599-193,627,337
(GRCh38/hg38)
Size:
8,739 bases
Orientation:
Minus strand
chr3:193,336,398-193,345,126
(GRCh37/hg19)
Size:
8,729 bases
Orientation:
Minus strand

Genomic View for OPA1-AS1 Gene

Genes around OPA1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OPA1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OPA1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OPA1-AS1 Gene

Proteins for OPA1-AS1 Gene

Post-translational modifications for OPA1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OPA1-AS1 Gene

Domains & Families for OPA1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OPA1-AS1 Gene

Function for OPA1-AS1 Gene

Phenotypes From GWAS Catalog for OPA1-AS1 Gene

Phenotypes for OPA1-AS1 Gene

GenomeRNAi human phenotypes for OPA1-AS1:
genes like me logo Genes that share phenotypes with OPA1-AS1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OPA1-AS1 Gene

Localization for OPA1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OPA1-AS1 Gene

Pathways & Interactions for OPA1-AS1 Gene

PathCards logo

SuperPathways for OPA1-AS1 Gene

No Data Available

Interacting Proteins for OPA1-AS1 Gene

Gene Ontology (GO) - Biological Process for OPA1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OPA1-AS1 Gene

Drugs & Compounds for OPA1-AS1 Gene

No Compound Related Data Available

Transcripts for OPA1-AS1 Gene

mRNA/cDNA for OPA1-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Unigene Clusters for OPA1-AS1 Gene

OPA1 antisense RNA 1:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for OPA1-AS1 Gene

No ASD Table

Relevant External Links for OPA1-AS1 Gene

GeneLoc Exon Structure for
OPA1-AS1
ECgene alternative splicing isoforms for
OPA1-AS1

Expression for OPA1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OPA1-AS1 Gene

SOURCE GeneReport for Unigene cluster for OPA1-AS1 Gene:

Hs.679364
genes like me logo Genes that share expression patterns with OPA1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OPA1-AS1 Gene

Orthologs for OPA1-AS1 Gene

Evolution for OPA1-AS1 Gene

ENSEMBL:
Gene Tree for OPA1-AS1 (if available)
TreeFam:
Gene Tree for OPA1-AS1 (if available)

No data available for Orthologs for OPA1-AS1 Gene

Paralogs for OPA1-AS1 Gene

No data available for Paralogs for OPA1-AS1 Gene

Variants for OPA1-AS1 Gene

Sequence variations from dbSNP and Humsavar for OPA1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs138350727 pathogenic, uncertain-significance, Dominant hereditary optic atrophy, not provided 193,626,153(-) G/A/T intron_variant
rs1553872742 pathogenic, Dominant hereditary optic atrophy 193,618,938(-) T/G intron_variant
rs200243596 uncertain-significance, Optic Atrophy, Dominant, not specified 193,618,911(-) C/T splice_acceptor_variant
rs34307082 benign, likely-benign, not specified, Optic Atrophy, Dominant, not provided 193,618,887(-) C/T non_coding_transcript_variant
rs757018661 uncertain-significance, Limb pain, Mildly elevated creatine phosphokinase, Myotonia, Osteoporosis 193,626,088(-) G/A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for OPA1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759212 CNV gain 17122850

Additional Variant Information for OPA1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OPA1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OPA1-AS1 Gene

Disorders for OPA1-AS1 Gene

Additional Disease Information for OPA1-AS1

No disorders were found for OPA1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OPA1-AS1 Gene

Publications for OPA1-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for OPA1-AS1 Gene

Sources for OPA1-AS1 Gene

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