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Aliases for OPA1-AS1 Gene

Subcategory (RNA class) for OPA1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OPA1-AS1 Gene

  • OPA1 Antisense RNA 1 2 3 5
  • OPA1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for OPA1-AS1 Gene

Previous GeneCards Identifiers for OPA1-AS1 Gene

  • GC00U933583
  • GC03M193337

Summaries for OPA1-AS1 Gene

GeneCards Summary for OPA1-AS1 Gene

OPA1-AS1 (OPA1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for OPA1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OPA1-AS1 Gene

Genomics for OPA1-AS1 Gene

GeneHancer (GH) Regulatory Elements for OPA1-AS1 Gene

Promoters and enhancers for OPA1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I194129 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.3 -509.3 -509257 14.2 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 ZNF263 HES1 GC03P194137 LSG1 LRRC15 OPA1-AS1 ENSG00000272707 ENSG00000232874 ENSG00000244675 ATP13A3 TMEM44
GH03I194328 Enhancer 1.3 FANTOM5 Ensembl ENCODE 18.3 -700.8 -700763 0.6 HDGF ARNT NSD2 ZNF2 ZNF280A ZNF207 FOS RUNX3 ZNF202 MEF2D LSG1 OPA1-AS1 LRRC15 ACAP2-IT1 GC03P194342 GC03P194343 GC03P194349 PIR54267 GC03P194348 GC03P194347
GH03I194069 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 11.8 -443.9 -443889 4.2 HDGF FOXA2 MLX ZFP64 ARID4B NEUROD1 SIN3A DMAP1 ZNF2 YY1 LINC02028 ENSG00000276407 LOC102724877 LSG1 ENSG00000272707 LRRC15 OPA1-AS1 ENSG00000232874 HES1 FAM43A
GH03I193710 Enhancer 1 ENCODE 20 -84.3 -84281 1.9 PKNOX1 FOXA2 MLX ARID4B NEUROD1 DMAP1 ZBTB7B FOS SP5 NFYC LSG1 OPA1-AS1 LRRC15 GP5 ATP13A4 LOC102724808 RN7SL447P
GH03I194333 Enhancer 0.9 ENCODE 18.3 -700.4 -700420 0 HDAC1 HDGF ZNF473 ARNT NSD2 NFXL1 ZNF2 ZNF280A EGR1 ZNF207 LSG1 OPA1-AS1 ACAP2-IT1 GC03P194344 GC03P194346 GC03P194348 PIR54267 LINC00887 GC03P194349 GC03P194347
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OPA1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for OPA1-AS1 Gene

Genomic Locations for OPA1-AS1 Gene
chr3:193,618,599-193,627,337
(GRCh38/hg38)
Size:
8,739 bases
Orientation:
Minus strand
chr3:193,336,398-193,345,126
(GRCh37/hg19)

Genomic View for OPA1-AS1 Gene

Genes around OPA1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OPA1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OPA1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OPA1-AS1 Gene

Proteins for OPA1-AS1 Gene

Post-translational modifications for OPA1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OPA1-AS1 Gene

Domains & Families for OPA1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OPA1-AS1 Gene

Function for OPA1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OPA1-AS1 Gene

Localization for OPA1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OPA1-AS1 Gene

Pathways & Interactions for OPA1-AS1 Gene

SuperPathways for OPA1-AS1 Gene

No Data Available

Interacting Proteins for OPA1-AS1 Gene

Gene Ontology (GO) - Biological Process for OPA1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OPA1-AS1 Gene

Drugs & Compounds for OPA1-AS1 Gene

No Compound Related Data Available

Transcripts for OPA1-AS1 Gene

mRNA/cDNA for OPA1-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OPA1-AS1 Gene

OPA1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OPA1-AS1 Gene

No ASD Table

Relevant External Links for OPA1-AS1 Gene

GeneLoc Exon Structure for
OPA1-AS1
ECgene alternative splicing isoforms for
OPA1-AS1

Expression for OPA1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OPA1-AS1 Gene

SOURCE GeneReport for Unigene cluster for OPA1-AS1 Gene:

Hs.679364
genes like me logo Genes that share expression patterns with OPA1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OPA1-AS1 Gene

Orthologs for OPA1-AS1 Gene

Evolution for OPA1-AS1 Gene

ENSEMBL:
Gene Tree for OPA1-AS1 (if available)
TreeFam:
Gene Tree for OPA1-AS1 (if available)

No data available for Orthologs for OPA1-AS1 Gene

Paralogs for OPA1-AS1 Gene

No data available for Paralogs for OPA1-AS1 Gene

Variants for OPA1-AS1 Gene

Sequence variations from dbSNP and Humsavar for OPA1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs138350727 pathogenic, Dominant hereditary optic atrophy 193,626,153(-) G/A/T intron_variant
rs200243596 uncertain-significance, Optic Atrophy, Dominant, not specified 193,618,911(-) C/T splice_acceptor_variant
rs34307082 benign, likely-benign, not specified, Optic Atrophy, Dominant 193,618,887(-) C/T non_coding_transcript_variant
rs569675223 likely-benign, not specified 193,618,877(-) G/A/C non_coding_transcript_variant
rs143918255 uncertain-significance, not specified 193,626,161(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for OPA1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759212 CNV gain 17122850

Additional Variant Information for OPA1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OPA1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OPA1-AS1 Gene

Disorders for OPA1-AS1 Gene

Additional Disease Information for OPA1-AS1

No disorders were found for OPA1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OPA1-AS1 Gene

Publications for OPA1-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for OPA1-AS1 Gene

Sources for OPA1-AS1 Gene

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